Stefano de Pretis
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/INSPEcT |
| Branch: RELEASE_3_6 |
| Last Commit: ee54505 |
| Last Changed Date: 2017-10-30 12:40:52 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:26:32 -0400 (Thu, 12 Apr 2018).
| Package 698/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| INSPEcT 1.8.0 Stefano de Pretis
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: INSPEcT |
| Version: 1.8.0 |
| Command: rm -rf INSPEcT.buildbin-libdir INSPEcT.Rcheck && mkdir INSPEcT.buildbin-libdir INSPEcT.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=INSPEcT.buildbin-libdir INSPEcT_1.8.0.tar.gz >INSPEcT.Rcheck\00install.out 2>&1 && cp INSPEcT.Rcheck\00install.out INSPEcT-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=INSPEcT.buildbin-libdir --install="check:INSPEcT-install.out" --force-multiarch --no-vignettes --timings INSPEcT_1.8.0.tar.gz |
| StartedAt: 2018-04-12 00:50:33 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 01:01:00 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 626.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: INSPEcT.Rcheck |
| Warnings: 0 |
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### Running command:
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### rm -rf INSPEcT.buildbin-libdir INSPEcT.Rcheck && mkdir INSPEcT.buildbin-libdir INSPEcT.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=INSPEcT.buildbin-libdir INSPEcT_1.8.0.tar.gz >INSPEcT.Rcheck\00install.out 2>&1 && cp INSPEcT.Rcheck\00install.out INSPEcT-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=INSPEcT.buildbin-libdir --install="check:INSPEcT-install.out" --force-multiarch --no-vignettes --timings INSPEcT_1.8.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/INSPEcT.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'INSPEcT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'INSPEcT' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'INSPEcT' can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
data 3.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
modelRates 22.80 0.01 22.81
rocThresholds 21.30 0.02 21.31
makeSimDataset 7.71 0.14 33.59
compareSteady 6.65 0.14 6.84
makeRPKMs 6.18 0.33 6.52
makeSimModel 6.01 0.08 32.55
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
modelRates 35.17 0.00 35.18
rocThresholds 29.76 0.03 29.80
makeSimDataset 10.48 0.04 38.34
makeSimModel 9.07 0.07 40.03
compareSteady 7.95 0.11 8.15
makeRPKMs 7.64 0.16 7.80
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/INSPEcT.Rcheck/00check.log'
for details.
INSPEcT.Rcheck/00install.out
install for i386
* installing *source* package 'INSPEcT' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'INSPEcT'
finding HTML links ... done
AIC-INSPEcT-method html
Extract html
INSPEcT-class html
finding level-2 HTML links ... done
INSPEcT html
INSPEcT_diffsteady-class html
INSPEcT_model-class html
UCSC_mm9_genes_exons html
UCSC_mm9_genes_introns html
chisqmodel html
chisqtest html
combine html
compareSteady html
dim-INSPEcT-method html
featureNames-INSPEcT-method html
geneClass html
getModel html
inHeatmap html
labeledSF html
logLik html
makeModelRates html
makeRPKMs html
makeSimDataset html
makeSimModel html
modelRates html
modelingParams html
mycerIds10 html
nGenes html
nTpts html
newINSPEcT html
plotGene html
plotMA html
ratePvals html
ratesFirstGuess html
ratesFirstGuessVar html
removeModel html
rocCurve html
rocThresholds html
rpkms html
sfPlot html
simData1rep html
simData3rep html
simRates html
split html
testingParams html
totalSF html
tpts html
viewModelRates html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'INSPEcT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'INSPEcT' as INSPEcT_1.8.0.zip
* DONE (INSPEcT)
In R CMD INSTALL
In R CMD INSTALL
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INSPEcT.Rcheck/examples_i386/INSPEcT-Ex.timings
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INSPEcT.Rcheck/examples_x64/INSPEcT-Ex.timings
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