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CHECK report for HilbertCurve on malbec1

This page was generated on 2018-04-12 13:13:54 -0400 (Thu, 12 Apr 2018).

Package 653/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 1.9.1
Zuguang Gu
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/HilbertCurve
Branch: RELEASE_3_6
Last Commit: 220d193
Last Changed Date: 2017-11-01 05:48:04 -0400 (Wed, 01 Nov 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: HilbertCurve
Version: 1.9.1
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings HilbertCurve_1.9.1.tar.gz
StartedAt: 2018-04-12 00:15:59 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 00:17:57 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 118.1 seconds
RetCode: 0
Status:  OK 
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings HilbertCurve_1.9.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/HilbertCurve.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.9.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.0Mb
  sub-directories of 1Mb or more:
    doc   7.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        11.928  0.136  12.070
hc_layer-GenomicHilbertCurve-method  8.548  0.128   8.683
GenomicHilbertCurve                  7.868  0.032   8.166
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.6-bioc/meat/HilbertCurve.Rcheck/00check.log’
for details.



Installation output

HilbertCurve.Rcheck/00install.out

* installing *source* package ‘HilbertCurve’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HilbertCurve)

Tests output

HilbertCurve.Rcheck/tests/test-all.Rout


R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 8 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  3.380   0.060   3.436 

Example timings

HilbertCurve.Rcheck/HilbertCurve-Ex.timings

nameusersystemelapsed
GenomicHilbertCurve-class0.0000.0000.001
GenomicHilbertCurve7.8680.0328.166
HilbertCurve-class0.0000.0000.001
HilbertCurve0.9400.0040.979
default_overlay000
hc_centered_text-HilbertCurve-method0.0960.0000.094
hc_layer-GenomicHilbertCurve-method8.5480.1288.683
hc_layer-HilbertCurve-method11.928 0.13612.070
hc_layer-dispatch000
hc_level-HilbertCurve-method0.0200.0040.025
hc_map-GenomicHilbertCurve-method2.3240.0002.328
hc_normal_points-HilbertCurve-method000
hc_offset-HilbertCurve-method0.020.000.02
hc_png-HilbertCurve-method3.7920.0283.823
hc_points-GenomicHilbertCurve-method0.4000.0040.408
hc_points-HilbertCurve-method0.8360.0040.842
hc_points-dispatch0.0000.0000.001
hc_polygon-GenomicHilbertCurve-method0.6080.0040.612
hc_polygon-HilbertCurve-method0.0640.0000.061
hc_polygon-dispatch0.0000.0000.001
hc_rect-GenomicHilbertCurve-method0.2640.0000.265
hc_rect-HilbertCurve-method0.0280.0000.028
hc_rect-dispatch000
hc_segmented_points-HilbertCurve-method0.0000.0000.001
hc_segments-GenomicHilbertCurve-method0.5080.0000.507
hc_segments-HilbertCurve-method0.0520.0000.051
hc_segments-dispatch000
hc_text-GenomicHilbertCurve-method0.0960.0000.096
hc_text-HilbertCurve-method0.0760.0000.077
hc_text-dispatch0.0000.0000.001
show-HilbertCurve-method0.0040.0000.008
unzoom-HilbertCurve-method0.0040.0000.007
zoom-HilbertCurve-method0.0040.0000.007