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INSTALL report for GenomeInfoDb on tokay1

This page was generated on 2018-04-12 13:23:46 -0400 (Thu, 12 Apr 2018).

Package 559/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomeInfoDb 1.14.0
Bioconductor Package Maintainer
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/GenomeInfoDb
Branch: RELEASE_3_6
Last Commit: 4978308
Last Changed Date: 2017-10-30 12:40:11 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenomeInfoDb
Version: 1.14.0
Command: rm -rf GenomeInfoDb.buildbin-libdir && mkdir GenomeInfoDb.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GenomeInfoDb_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GenomeInfoDb.buildbin-libdir --merge-multiarch GenomeInfoDb_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GenomeInfoDb_1.14.0.zip && rm GenomeInfoDb_1.14.0.tar.gz GenomeInfoDb_1.14.0.zip
StartedAt: 2018-04-11 18:35:39 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:36:34 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 55.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf GenomeInfoDb.buildbin-libdir && mkdir GenomeInfoDb.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GenomeInfoDb_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GenomeInfoDb.buildbin-libdir --merge-multiarch GenomeInfoDb_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GenomeInfoDb_1.14.0.zip  && rm GenomeInfoDb_1.14.0.tar.gz GenomeInfoDb_1.14.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3029k  100 3029k    0     0  60.3M      0 --:--:-- --:--:-- --:--:-- 64.3M

install for i386

* installing *source* package 'GenomeInfoDb' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomeInfoDb'
    finding HTML links ... done
    GenomeDescription-class                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/GenomeDescription-class.Rd:45: missing file link 'BSgenome'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/GenomeDescription-class.Rd:46: missing file link 'BSgenome'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/GenomeDescription-class.Rd:126: missing file link 'BSgenome'
    Seqinfo-class                           html  
    available.species                       html  
    fetchExtendedChromInfoFromUCSC          html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/fetchExtendedChromInfoFromUCSC.Rd:130: missing file link 'getBSgenome'
    mapGenomeBuilds                         html  
    rankSeqlevels                           html  
    seqinfo                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:82: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:105: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:106: missing file link 'GAlignmentPairs'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:107: missing file link 'GAlignmentsList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:116: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:118: missing file link 'exonsBy'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:131: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:136: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:137: missing file link 'GAlignments'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:182: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:182: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:184: missing file link 'SummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:186: missing file link 'GAlignments'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:187: missing file link 'GAlignmentPairs'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:188: missing file link 'GAlignmentsList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:190: missing file link 'TxDb'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:192: missing file link 'BSgenome'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:227: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:227: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:230: missing file link 'SummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:233: missing file link 'GAlignments'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:234: missing file link 'GAlignmentPairs'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:235: missing file link 'GAlignmentsList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:238: missing file link 'TxDb'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpasImu5/R.INSTALL9a44b6073c3/GenomeInfoDb/man/seqinfo.Rd:241: missing file link 'BSgenome'
    seqlevels-wrappers                      html  
    seqlevelsStyle                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GenomeInfoDb' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomeInfoDb' as GenomeInfoDb_1.14.0.zip
* DONE (GenomeInfoDb)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'GenomeInfoDb' successfully unpacked and MD5 sums checked
In R CMD INSTALL