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INSTALL report for GeneAnswers on tokay1

This page was generated on 2018-04-12 13:19:53 -0400 (Thu, 12 Apr 2018).

Package 530/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneAnswers 2.20.0
Lei Huang and Gang Feng
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/GeneAnswers
Branch: RELEASE_3_6
Last Commit: fd10dcd
Last Changed Date: 2017-10-30 12:39:27 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: GeneAnswers
Version: 2.20.0
Command: rm -rf GeneAnswers.buildbin-libdir && mkdir GeneAnswers.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GeneAnswers_2.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneAnswers.buildbin-libdir --merge-multiarch GeneAnswers_2.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GeneAnswers_2.20.0.zip && rm GeneAnswers_2.20.0.tar.gz GeneAnswers_2.20.0.zip
StartedAt: 2018-04-11 18:30:16 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:33:13 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 177.0 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   rm -rf GeneAnswers.buildbin-libdir && mkdir GeneAnswers.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GeneAnswers_2.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneAnswers.buildbin-libdir --merge-multiarch GeneAnswers_2.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GeneAnswers_2.20.0.zip  && rm GeneAnswers_2.20.0.tar.gz GeneAnswers_2.20.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 32.6M  100 32.6M    0     0   104M      0 --:--:-- --:--:-- --:--:--  105M

install for i386

* installing *source* package 'GeneAnswers' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers'
Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers'
** help
*** installing help indices
  converting help for package 'GeneAnswers'
    finding HTML links ... done
    DO                                      html  
    DOLite                                  html  
    DOLiteTerm                              html  
    DmIALite                                html  
    GeneAnswers-class                       html  
    GeneAnswers-package                     html  
    HsIALite                                html  
    MmIALite                                html  
    RnIALite                                html  
    buildNet                                html  
    caBIO.PATHGenes                         html  
    caBIO2entrez                            html  
    categoryNet                             html  
    chartPlots                              html  
    drawTable                               html  
    entrez2caBIO                            html  
    geneAnnotationHeatmap                   html  
    geneAnswersBuilder                      html  
    geneAnswersChartPlots                   html  
    geneAnswersConceptNet                   html  
    geneAnswersConceptRelation              html  
    geneAnswersConcepts                     html  
    geneAnswersHeatmap                      html  
    geneAnswersHomoMapping                  html  
    geneAnswersReadable                     html  
    geneAnswersSort                         html  
    geneConceptNet                          html  
    getCategoryList                         html  
    getCategoryTerms                        html  
    getConceptTable                         html  
    getConnectedGraph                       html  
    getDOLiteTerms                          html  
    getGOList                               html  
    getHomoGeneIDs                          html  
    getListGIF                              html  
    getMultiLayerGraphIDs                   html  
    getNextGOIDs                            html  
    getPATHList                             html  
    getPATHTerms                            html  
    getREACTOMEPATHList                     html  
    getREACTOMEPATHTerms                    html  
    getSingleLayerGraphIDs                  html  
    getSymbols                              html  
    getTotalGeneNumber                      html  
    getcaBIOPATHList                        html  
    getcaBIOPATHTerms                       html  
    groupReport                             html  
    humanExpr                               html  
    humanGeneInput                          html  
    mouseExpr                               html  
    mouseGeneInput                          html  
    sampleGroupsData                        html  
    searchEntrez                            html  
    topCategory                             html  
    topCategoryGenes                        html  
    topDOLITE                               html  
    topDOLITEGenes                          html  
    topGO                                   html  
    topGOGenes                              html  
    topPATH                                 html  
    topPATHGenes                            html  
    topREACTOME.PATH                        html  
    topREACTOME.PATHGenes                   html  
    topcaBIO.PATH                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers'
Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers'
In R CMD INSTALL

install for x64

* installing *source* package 'GeneAnswers' ...
** testing if installed package can be loaded
Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers'
Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers'
* MD5 sums
packaged installation of 'GeneAnswers' as GeneAnswers_2.20.0.zip
* DONE (GeneAnswers)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'GeneAnswers' successfully unpacked and MD5 sums checked
In R CMD INSTALL