Stephanie M. Gogarten
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/GWASTools |
| Branch: RELEASE_3_6 |
| Last Commit: d2a1c8b |
| Last Changed Date: 2018-01-18 14:24:13 -0400 (Thu, 18 Jan 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:21:17 -0400 (Thu, 12 Apr 2018).
| Package 635/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GWASTools 1.24.1 Stephanie M. Gogarten
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GWASTools |
| Version: 1.24.1 |
| Command: cd GWASTools.buildbin-libdir/GWASTools && zip -r ../../GWASTools_1.24.1.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:44:22 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:45:07 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 45.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GWASTools_1.24.1.zip |
| PackageFileSize: 3.829 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd GWASTools.buildbin-libdir/GWASTools && zip -r ../../GWASTools_1.24.1.zip . & cd ../.. ### ############################################################################## ############################################################################## Scanning files adding: CITATION (332 bytes security) (deflated 29%) adding: data/ (372 bytes security) (stored 0%) adding: data/Rdata.rdb (332 bytes security) (deflated 22%) adding: data/Rdata.rds (332 bytes security) (stored 0%) adding: data/Rdata.rdx (332 bytes security) (stored 0%) adding: DESCRIPTION (332 bytes security) (deflated 57%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/Affymetrix.pdf (332 bytes security) (deflated 8%) adding: doc/Affymetrix.R (332 bytes security) (deflated 76%) adding: doc/Affymetrix.Rnw (332 bytes security) 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security) (deflated 58%) adding: html/anomDetectBAF.html (332 bytes security) (deflated 73%) adding: html/anomDetectLOH.html (332 bytes security) (deflated 77%) adding: html/anomIdentifyLowQuality.html (332 bytes security) (deflated 70%) adding: html/anomSegStats.html (332 bytes security) (deflated 75%) adding: html/apartSnpSelection.html (332 bytes security) (deflated 59%) adding: html/assocCoxPH.html (332 bytes security) (deflated 68%) adding: html/assocRegression.html (332 bytes security) (deflated 73%) adding: html/BAFfromClusterMeans.html (332 bytes security) (deflated 59%) adding: html/BAFfromGenotypes.html (332 bytes security) (deflated 62%) adding: html/batchTest.html (332 bytes security) (deflated 69%) adding: html/centromeres.html (332 bytes security) (deflated 55%) adding: html/chromIntensityPlot.html (332 bytes security) (deflated 66%) adding: html/convertNcdfGds.html (332 bytes security) (deflated 62%) adding: html/createDataFile.html (332 bytes security) (deflated 76%) 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(deflated 50%) adding: html/getVariable.html (332 bytes security) (deflated 74%) adding: html/GWASTools-package.html (332 bytes security) (deflated 57%) adding: html/hetByScanChrom.html (332 bytes security) (deflated 56%) adding: html/hetBySnpSex.html (332 bytes security) (deflated 56%) adding: html/HLA.html (332 bytes security) (deflated 49%) adding: html/ibdPlot.html (332 bytes security) (deflated 68%) adding: html/imputedDosageFile.html (332 bytes security) (deflated 73%) adding: html/IntensityData-class.html (332 bytes security) (deflated 76%) adding: html/intensityOutliersPlot.html (332 bytes security) (deflated 62%) adding: html/manhattanPlot.html (332 bytes security) (deflated 61%) adding: html/MatrixGenotypeReader-class.html (332 bytes security) (deflated 67%) adding: html/meanIntensityByScanChrom.html (332 bytes security) (deflated 65%) adding: html/mendelErr.html (332 bytes security) (deflated 69%) adding: html/mendelList.html (332 bytes security) (deflated 64%) adding: 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bytes security) (deflated 54%) adding: html/qqPlot.html (332 bytes security) (deflated 58%) adding: html/qualityScoreByScan.html (332 bytes security) (deflated 62%) adding: html/qualityScoreBySnp.html (332 bytes security) (deflated 63%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/readWriteFirst.html (332 bytes security) (deflated 54%) adding: html/relationsMeanVar.html (332 bytes security) (deflated 61%) adding: html/saveas.html (332 bytes security) (deflated 52%) adding: html/ScanAnnotationDataFrame-class.html (332 bytes security) (deflated 69%) adding: html/ScanAnnotationSQLite-class.html (332 bytes security) (deflated 69%) adding: html/setMissingGenotypes.html (332 bytes security) (deflated 61%) adding: html/simulateGenotypeMatrix.html (332 bytes security) (deflated 64%) adding: html/SnpAnnotationDataFrame-class.html (332 bytes security) (deflated 72%) adding: html/SnpAnnotationSQLite-class.html (332 bytes security) (deflated 73%) adding: html/snpCorrelationPlot.html (332 bytes security) (deflated 58%) adding: html/snpStats.html (332 bytes security) (deflated 66%) adding: html/vcfWrite.html (332 bytes security) (deflated 65%) adding: INDEX (332 bytes security) (deflated 66%) adding: MD5 (332 bytes security) (deflated 54%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (deflated 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 68%) adding: NEWS.Rd (332 bytes security) (deflated 73%) adding: R/ (372 bytes security) (stored 0%) adding: R/GWASTools (332 bytes security) (deflated 41%) adding: R/GWASTools.rdb (332 bytes security) (deflated 22%) adding: R/GWASTools.rdx (332 bytes security) (deflated 1%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/alleleFrequency_test.R (332 bytes security) (deflated 78%) adding: unitTests/allequal_test.R (332 bytes security) (deflated 41%) adding: unitTests/anomDetectBAF_test.R (332 bytes security) (deflated 73%) adding: unitTests/apartSnpSelection_test.R (332 bytes security) (deflated 57%) adding: unitTests/assocCoxPH_test.R (332 bytes security) (deflated 73%) adding: unitTests/assocRegression_test.R (332 bytes security) (deflated 84%) adding: unitTests/asVCF_test.R (332 bytes security) (deflated 80%) adding: unitTests/BAFfromClusterMeans_test.R (332 bytes security) (deflated 42%) adding: unitTests/BAFfromGenotypes_test.R (332 bytes security) (deflated 69%) adding: unitTests/batchChisqTest_test.R (332 bytes security) (deflated 84%) adding: unitTests/batchFisherTest_test.R (332 bytes security) (deflated 84%) adding: unitTests/checkGenotypeFile_test.R (332 bytes security) (deflated 87%) adding: unitTests/checkImputedDosageFile_test.R (332 bytes security) (deflated 91%) adding: unitTests/checkIntensityFile_test.R (332 bytes security) (deflated 83%) adding: unitTests/chromIntensityPlot_test.R (332 bytes security) (deflated 73%) adding: unitTests/convertNcdfGds_test.R (332 bytes security) (deflated 81%) adding: unitTests/createAffyIntensityFile_test.R (332 bytes security) (deflated 80%) adding: unitTests/createDataFile_test.R (332 bytes security) (deflated 88%) adding: unitTests/dupDosageCorAcrossDatasets_test.R (332 bytes security) (deflated 75%) adding: unitTests/duplicateDiscordanceAcrossDatasets_test.R (332 bytes security) (deflated 88%) adding: unitTests/duplicateDiscordance_test.R (332 bytes security) (deflated 80%) adding: unitTests/exactHWE_test.R (332 bytes security) (deflated 70%) adding: unitTests/findBAFvariance_test.R (332 bytes security) (deflated 63%) adding: unitTests/GdsGenotypeReader_test.R (332 bytes security) (deflated 85%) adding: unitTests/GdsIntensityReader_test.R (332 bytes security) (deflated 65%) adding: unitTests/GdsReader_test.R (332 bytes security) (deflated 76%) adding: unitTests/gdsSubsetCheck_test.R (332 bytes security) (deflated 88%) adding: unitTests/gdsSubset_test.R (332 bytes security) (deflated 94%) adding: unitTests/GenotypeData_test.R (332 bytes security) (deflated 81%) adding: unitTests/genotypeToCharacter_test.R (332 bytes security) (deflated 73%) adding: unitTests/getobj_test.R (332 bytes security) (deflated 26%) adding: unitTests/hetByScanChrom_test.R (332 bytes security) (deflated 69%) adding: unitTests/hetBySnpSex_test.R (332 bytes security) (deflated 66%) adding: unitTests/ibdPlot_test.R (332 bytes security) (deflated 57%) adding: unitTests/imputedDosageFile_test.R (332 bytes security) (deflated 90%) adding: unitTests/IntensityData_test.R (332 bytes security) (deflated 70%) adding: unitTests/MatrixGenotypeReader_test.R (332 bytes security) (deflated 70%) adding: unitTests/meanIntensityByScanChrom_test.R (332 bytes security) (deflated 76%) adding: unitTests/missingGenotypeByScanChrom_test.R (332 bytes security) (deflated 68%) adding: unitTests/missingGenotypeBySnpSex_test.R (332 bytes security) (deflated 71%) adding: unitTests/NcdfGenotypeReader_test.R (332 bytes security) (deflated 68%) adding: unitTests/NcdfIntensityReader_test.R (332 bytes security) (deflated 69%) adding: unitTests/NcdfReader_test.R (332 bytes security) (deflated 66%) adding: unitTests/pedigreeCheck_test.R (332 bytes security) (deflated 76%) adding: unitTests/pedigreeMaxUnrelated_test.R (332 bytes security) (deflated 86%) adding: unitTests/pedigreePairwiseRelatedness_test.R (332 bytes security) (deflated 78%) adding: unitTests/plinkUtils_test.R (332 bytes security) (deflated 81%) adding: unitTests/pseudoautoIntensityPlot_test.R (332 bytes security) (deflated 49%) adding: unitTests/qualityScoreByScan_test.R (332 bytes security) (deflated 65%) adding: unitTests/qualityScoreBySnp_test.R (332 bytes security) (deflated 69%) adding: unitTests/saveas_test.R (332 bytes security) (deflated 63%) adding: unitTests/ScanAnnotationDataFrame_test.R (332 bytes security) (deflated 64%) adding: unitTests/ScanAnnotationSQLite_test.R (332 bytes security) (deflated 67%) adding: unitTests/setMissingGenotypes_test.R (332 bytes security) (deflated 70%) adding: unitTests/SnpAnnotationDataFrame_test.R (332 bytes security) (deflated 72%) adding: unitTests/SnpAnnotationSQLite_test.R (332 bytes security) (deflated 68%) adding: unitTests/snpStats_test.R (332 bytes security) (deflated 62%) adding: unitTests/vcfWrite_test.R (332 bytes security) (deflated 83%)