Package: GSAR

Version: 1.12.0

Command: rm -rf GSAR.buildbin-libdir GSAR.Rcheck && mkdir GSAR.buildbin-libdir GSAR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSAR.buildbin-libdir GSAR_1.12.0.tar.gz >GSAR.Rcheck\00install.out 2>&1 && cp GSAR.Rcheck\00install.out GSAR-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=GSAR.buildbin-libdir --install="check:GSAR-install.out" --force-multiarch --no-vignettes --timings GSAR_1.12.0.tar.gz

StartedAt: 2018-04-12 00:35:34 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 00:36:44 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 70.1 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: GSAR.Rcheck

Warnings: 1

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GSAR.buildbin-libdir GSAR.Rcheck && mkdir GSAR.buildbin-libdir GSAR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSAR.buildbin-libdir GSAR_1.12.0.tar.gz >GSAR.Rcheck\00install.out 2>&1 && cp GSAR.Rcheck\00install.out GSAR-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=GSAR.buildbin-libdir --install="check:GSAR-install.out" --force-multiarch --no-vignettes --timings GSAR_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/GSAR.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSAR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GSAR' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSAR' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqGvgZp/R.INSTALL2d842f8c885/GSAR/man/GSAR-package.Rd:69: missing file link 'igraph-package'
See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/GSAR.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
WWtest    5.44      0    5.44
AggrFtest 5.21      0    5.20
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/GSAR.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'GSAR' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GSAR'
    finding HTML links ... done
    AggrFtest                               html  
    GSAR-package                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqGvgZp/R.INSTALL2d842f8c885/GSAR/man/GSAR-package.Rd:69: missing file link 'igraph-package'
    GSNCAtest                               html  
    HDP.ranking                             html  
    finding level-2 HTML links ... done

    KStest                                  html  
    MDtest                                  html  
    RKStest                                 html  
    RMDtest                                 html  
    TestGeneSets                            html  
    WWtest                                  html  
    findMST2.PPI                            html  
    findMST2                                html  
    p53DataSet                              html  
    plotMST2.pathway                        html  
    radial.ranking                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GSAR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSAR' as GSAR_1.12.0.zip
* DONE (GSAR)
In R CMD INSTALL
In R CMD INSTALL