VJ Carey
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/GGBase |
| Branch: RELEASE_3_6 |
| Last Commit: 2bf18cf |
| Last Changed Date: 2017-10-30 12:39:23 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:19:12 -0400 (Thu, 12 Apr 2018).
| Package 581/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GGBase 3.40.0 VJ Carey
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GGBase |
| Version: 3.40.0 |
| Command: rm -rf GGBase.buildbin-libdir && mkdir GGBase.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GGBase_3.40.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GGBase.buildbin-libdir --merge-multiarch GGBase_3.40.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GGBase_3.40.0.zip && rm GGBase_3.40.0.tar.gz GGBase_3.40.0.zip |
| StartedAt: 2018-04-11 18:40:40 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:41:29 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 48.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf GGBase.buildbin-libdir && mkdir GGBase.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GGBase_3.40.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GGBase.buildbin-libdir --merge-multiarch GGBase_3.40.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GGBase_3.40.0.zip && rm GGBase_3.40.0.tar.gz GGBase_3.40.0.zip
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install for i386
* installing *source* package 'GGBase' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'GGBase'
finding HTML links ... done
MAFfilter html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpUBinMs/R.INSTALL159018ea4d8f/GGBase/man/MAFfilter.Rd:37: missing file link 'col.summary'
clipPCs html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpUBinMs/R.INSTALL159018ea4d8f/GGBase/man/clipPCs.Rd:27: missing file link 'RangedSummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpUBinMs/R.INSTALL159018ea4d8f/GGBase/man/clipPCs.Rd:31: missing file link 'RangedSummarizedExperiment'
externalize html
make_smlSet html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpUBinMs/R.INSTALL159018ea4d8f/GGBase/man/make_smlSet.Rd:22: missing file link 'ExpressionSet-class'
plot_EvG html
rsid-class html
finding level-2 HTML links ... done
smlSet-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpUBinMs/R.INSTALL159018ea4d8f/GGBase/man/smlSet-class.Rd:35: missing file link 'AssayData-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpUBinMs/R.INSTALL159018ea4d8f/GGBase/man/smlSet-class.Rd:37: missing file link 'AnnotatedDataFrame-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpUBinMs/R.INSTALL159018ea4d8f/GGBase/man/smlSet-class.Rd:41: missing file link 'MIAxE-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpUBinMs/R.INSTALL159018ea4d8f/GGBase/man/smlSet-class.Rd:44: missing file link 'eSet-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpUBinMs/R.INSTALL159018ea4d8f/GGBase/man/smlSet-class.Rd:65: missing file link 'nsFilter,ExpressionSet-method'
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GGBase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GGBase' as GGBase_3.40.0.zip
* DONE (GGBase)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'GGBase' successfully unpacked and MD5 sums checked
In R CMD INSTALL