GEOmetadb 1.40.0
Jack Zhu
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/GEOmetadb |
| Branch: RELEASE_3_6 |
| Last Commit: 433868b |
| Last Changed Date: 2018-02-08 09:53:42 -0400 (Thu, 08 Feb 2018) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | [ ERROR ] | skipped | skipped | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### chmod a+r GEOmetadb -R && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GEOmetadb
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* checking for file 'GEOmetadb/DESCRIPTION' ... OK
* preparing 'GEOmetadb':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.6-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: GEOquery
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall,
clusterEvalQ, clusterExport, clusterMap,
parApply, parCapply, parLapply, parLapplyLB,
parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce,
anyDuplicated, append, as.data.frame, cbind,
colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths,
mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique,
unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material;
view with 'browseVignettes()'. To cite
Bioconductor, see 'citation("Biobase")', and
for packages 'citation("pkgname")'.
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Loading required package: RSQLite
trying URL 'http://starbuck1.s3.amazonaws.com/sradb/GEOmetadb.sqlite.gz'
Content type 'binary/octet-stream' length 439295442 bytes (418.9 MB)
==================================================
downloaded 418.9 MB
Loading required package: NLP
Attaching package: 'NLP'
The following object is masked from 'package:Biobase':
content
Loading required package: RColorBrewer
Quitting from lines 251-265 (GEOmetadb.Rmd)
Error: processing vignette 'GEOmetadb.Rmd' failed with diagnostics:
invalid input 'ménageÃ' in 'utf8towcs'
Execution halted