Back to Multiple platform build/check report for BioC 3.6
ABCDE[F]GHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for FitHiC on veracruz1

This page was generated on 2018-04-12 13:43:41 -0400 (Thu, 12 Apr 2018).

Package 466/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FitHiC 1.4.0
Ruyu Tan
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/FitHiC
Branch: RELEASE_3_6
Last Commit: 7dc5288
Last Changed Date: 2017-10-30 12:41:22 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: FitHiC
Version: 1.4.0
Command: rm -rf FitHiC.buildbin-libdir && mkdir FitHiC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FitHiC_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R FitHiC.buildbin-libdir
StartedAt: 2018-04-12 11:28:06 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 11:28:20 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 13.7 seconds
RetCode: 0
Status:  OK 
PackageFile: FitHiC_1.4.0.tgz
PackageFileSize: 27.91 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf FitHiC.buildbin-libdir && mkdir FitHiC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FitHiC_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R FitHiC.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=FitHiC.buildbin-libdir FitHiC_1.4.0.tar.gz'
>>>>>>> 

* installing *source* package ‘FitHiC’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c FitHiC_init.c -o FitHiC_init.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c helper.cpp -o helper.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o FitHiC.so FitHiC_init.o RcppExports.o helper.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/FitHiC.buildbin-libdir/FitHiC/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (FitHiC)


>>>>>>> 
>>>>>>> FIXING LINKS FOR FitHiC.buildbin-libdir/FitHiC/libs//FitHiC.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "FitHiC.buildbin-libdir/FitHiC/libs//FitHiC.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "FitHiC.buildbin-libdir/FitHiC/libs//FitHiC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "FitHiC.buildbin-libdir/FitHiC/libs//FitHiC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "FitHiC.buildbin-libdir/FitHiC/libs//FitHiC.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "FitHiC.buildbin-libdir/FitHiC/libs//FitHiC.so"