Package: EWCE

Version: 1.6.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EWCE

StartedAt: 2018-04-11 23:53:52 -0400 (Wed, 11 Apr 2018)

EndedAt: 2018-04-11 23:55:13 -0400 (Wed, 11 Apr 2018)

EllapsedTime: 81.1 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EWCE
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* checking for file ‘EWCE/DESCRIPTION’ ... OK
* preparing ‘EWCE’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Warning: Package 'EWCE' is deprecated and will be removed from Bioconductor
  version 3.7
sh: line 1: 29515 Abort trap: 6           'convert' 'EWCE_files/figure-html/unnamed-chunk-2-1.png' -trim 'EWCE_files/figure-html/unnamed-chunk-2-1.png' > /dev/null
sh: line 1: 29530 Abort trap: 6           'convert' 'EWCE_files/figure-html/unnamed-chunk-3-1.png' -trim 'EWCE_files/figure-html/unnamed-chunk-3-1.png' > /dev/null
sh: line 1: 29542 Abort trap: 6           'convert' 'EWCE_files/figure-html/unnamed-chunk-4-1.png' -trim 'EWCE_files/figure-html/unnamed-chunk-4-1.png' > /dev/null
sh: line 1: 29810 Abort trap: 6           'convert' 'EWCE_files/figure-html/unnamed-chunk-11-1.png' -trim 'EWCE_files/figure-html/unnamed-chunk-11-1.png' > /dev/null
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 138 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 217 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 138 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 50 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 490 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 519 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 332 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 345 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 199 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 221 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 221 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 221 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 413 rows containing non-finite values (stat_boxplot).
Warning: The plyr::rename operation has created duplicates for the following name(s): (`colour`)
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 335 rows containing non-finite values (stat_boxplot).
Quitting from lines 220-223 (EWCE.Rmd) 
Error: processing vignette 'EWCE.Rmd' failed with diagnostics:
Invalid attribute(s): percentage_gc_content 
Please use the function 'listAttributes' to get valid attribute names
Execution halted