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INSTALL report for EBcoexpress on tokay1

This page was generated on 2018-04-12 13:21:44 -0400 (Thu, 12 Apr 2018).

Package 401/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EBcoexpress 1.22.0
John A. Dawson
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/EBcoexpress
Branch: RELEASE_3_6
Last Commit: 4192ed4
Last Changed Date: 2017-10-30 12:39:40 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: EBcoexpress
Version: 1.22.0
Command: rm -rf EBcoexpress.buildbin-libdir && mkdir EBcoexpress.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/EBcoexpress_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=EBcoexpress.buildbin-libdir --merge-multiarch EBcoexpress_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL EBcoexpress_1.22.0.zip && rm EBcoexpress_1.22.0.tar.gz EBcoexpress_1.22.0.zip
StartedAt: 2018-04-11 18:23:38 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:24:23 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 44.2 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   rm -rf EBcoexpress.buildbin-libdir && mkdir EBcoexpress.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/EBcoexpress_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=EBcoexpress.buildbin-libdir --merge-multiarch EBcoexpress_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL EBcoexpress_1.22.0.zip  && rm EBcoexpress_1.22.0.tar.gz EBcoexpress_1.22.0.zip
###
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install for i386

* installing *source* package 'EBcoexpress' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c EBcoexpress.c -o EBcoexpress.o
EBcoexpress.c: In function 'bwmcCworker':
EBcoexpress.c:74:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
       if(temp < -1 | temp > 1)
               ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o EBcoexpress.dll tmp.def EBcoexpress.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/EBcoexpress.buildbin-libdir/EBcoexpress/libs/i386
** R
** data
** demo
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'EBcoexpress'
    finding HTML links ... done
    ebCoexpressMeta                         html  
    ebCoexpressSeries                       html  
    fiftyGenes                              html  
    initializeHP                            html  
    makeMyD                                 html  
    priorDiagnostic                         html  
    rankMyGenes                             html  
    showNetwork                             html  
    showPair                                html  
    utilities                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'EBcoexpress' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c EBcoexpress.c -o EBcoexpress.o
EBcoexpress.c: In function 'bwmcCworker':
EBcoexpress.c:74:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
       if(temp < -1 | temp > 1)
               ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o EBcoexpress.dll tmp.def EBcoexpress.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/EBcoexpress.buildbin-libdir/EBcoexpress/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EBcoexpress' as EBcoexpress_1.22.0.zip
* DONE (EBcoexpress)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'EBcoexpress' successfully unpacked and MD5 sums checked
In R CMD INSTALL