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INSTALL report for DSS on tokay1

This page was generated on 2018-04-12 13:21:51 -0400 (Thu, 12 Apr 2018).

Package 391/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DSS 2.26.0
Hao Wu
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/DSS
Branch: RELEASE_3_6
Last Commit: 5bdf6cc
Last Changed Date: 2017-10-30 12:39:43 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: DSS
Version: 2.26.0
Command: rm -rf DSS.buildbin-libdir && mkdir DSS.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/DSS_2.26.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=DSS.buildbin-libdir --merge-multiarch DSS_2.26.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL DSS_2.26.0.zip && rm DSS_2.26.0.tar.gz DSS_2.26.0.zip
StartedAt: 2018-04-11 18:44:35 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:45:29 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 54.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf DSS.buildbin-libdir && mkdir DSS.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/DSS_2.26.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=DSS.buildbin-libdir --merge-multiarch DSS_2.26.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL DSS_2.26.0.zip  && rm DSS_2.26.0.tar.gz DSS_2.26.0.zip
###
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install for i386

* installing *source* package 'DSS' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c compute_var_smooth.c -o compute_var_smooth.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c filter.c -o filter.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c nitem.c -o nitem.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o DSS.dll tmp.def compute_var_smooth.o filter.o nitem.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/DSS.buildbin-libdir/DSS/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'DSS'
    finding HTML links ... done
    DMLfit.multiFactor                      html  
    DMLtest                                 html  
    DMLtest.multiFactor                     html  
    DSS-package                             html  
    DSS.DE                                  html  
    RRBS                                    html  
    SeqCountSet-class                       html  
    finding level-2 HTML links ... done

    callDML                                 html  
    callDMR                                 html  
    design                                  html  
    dispersion                              html  
    estDispersion                           html  
    estNormFactors                          html  
    makeBSseqData                           html  
    normalizationFactor                     html  
    seqData                                 html  
    showOneDMR                              html  
    waldTest                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'DSS' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c compute_var_smooth.c -o compute_var_smooth.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c filter.c -o filter.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c nitem.c -o nitem.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o DSS.dll tmp.def compute_var_smooth.o filter.o nitem.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/DSS.buildbin-libdir/DSS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DSS' as DSS_2.26.0.zip
* DONE (DSS)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'DSS' successfully unpacked and MD5 sums checked
In R CMD INSTALL