Helen Lindsay
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/CrispRVariants |
| Branch: RELEASE_3_6 |
| Last Commit: 4c51a12 |
| Last Changed Date: 2017-10-30 12:41:11 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:27:17 -0400 (Thu, 12 Apr 2018).
| Package 310/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CrispRVariants 1.6.0 Helen Lindsay
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: CrispRVariants |
| Version: 1.6.0 |
| Command: cd CrispRVariants.buildbin-libdir/CrispRVariants && zip -r ../../CrispRVariants_1.6.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:32:57 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:33:36 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 38.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CrispRVariants_1.6.0.zip |
| PackageFileSize: 2.92 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd CrispRVariants.buildbin-libdir/CrispRVariants && zip -r ../../CrispRVariants_1.6.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 59%) adding: data/ (372 bytes security) (stored 0%) adding: data/Rdata.rdb (332 bytes security) (deflated 6%) adding: data/Rdata.rds (332 bytes security) (stored 0%) adding: data/Rdata.rdx (332 bytes security) (stored 0%) adding: DESCRIPTION (332 bytes security) (deflated 45%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 59%) adding: doc/user_guide.pdf (332 bytes security) (deflated 36%) adding: doc/user_guide.R (332 bytes security) (deflated 74%) adding: doc/user_guide.Rmd (332 bytes security) (deflated 68%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/ab1/ (372 bytes security) (stored 0%) adding: extdata/ab1/ptena/ (372 bytes security) (stored 0%) adding: extdata/ab1/ptena/phenotype/ (372 bytes security) (stored 0%) adding: extdata/ab1/ptena/phenotype/embryo1/ (372 bytes security) (stored 0%) adding: extdata/ab1/ptena/phenotype/embryo1/AB2001.ab1 (332 bytes security) (deflated 68%) adding: extdata/bam/ (372 bytes security) (stored 0%) adding: extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam (332 bytes security) (stored 0%) adding: extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam.bai (332 bytes security) (deflated 99%) adding: extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam (332 bytes security) (stored 0%) adding: extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam.bai (332 bytes security) (deflated 99%) adding: extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam (332 bytes security) (stored 0%) adding: extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam.bai (332 bytes security) (deflated 99%) adding: extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam (332 bytes security) (stored 0%) adding: extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam.bai (332 bytes security) (deflated 99%) adding: extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam (332 bytes security) (stored 0%) adding: extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam.bai (332 bytes security) (deflated 99%) adding: extdata/bed/ (372 bytes security) (stored 0%) adding: extdata/bed/guide.bed (332 bytes security) (deflated 7%) adding: extdata/cntnap2b_test_data.fastq.gz (332 bytes security) (stored 0%) adding: extdata/cntnap2b_test_data_guide.bed (332 bytes security) (deflated 11%) adding: extdata/cntnap2b_test_data_s.bam (332 bytes security) (stored 0%) adding: extdata/Danio_rerio.Zv9.73.gol.sqlite (332 bytes security) (deflated 88%) adding: extdata/gol_F1_clutch_1_embryo_1_s.bam (332 bytes security) (stored 0%) adding: extdata/gol_F1_clutch_1_embryo_1_s.bam.bai (332 bytes security) (deflated 99%) adding: extdata/gol_F1_clutch_1_embryo_2_s.bam (332 bytes security) (stored 0%) adding: extdata/gol_F1_clutch_1_embryo_2_s.bam.bai (332 bytes security) (deflated 99%) adding: extdata/gol_F1_clutch_1_embryo_3_s.bam (332 bytes security) (stored 0%) adding: extdata/gol_F1_clutch_1_embryo_3_s.bam.bai (332 bytes security) (deflated 99%) adding: extdata/gol_F1_clutch_1_embryo_4_s.bam (332 bytes security) (stored 0%) adding: extdata/gol_F1_clutch_1_embryo_4_s.bam.bai (332 bytes security) (deflated 100%) adding: extdata/gol_F1_clutch_1_embryo_5_s.bam (332 bytes security) (stored 0%) adding: extdata/gol_F1_clutch_1_embryo_5_s.bam.bai (332 bytes security) (deflated 99%) adding: extdata/gol_F1_clutch_1_embryo_6_s.bam (332 bytes security) (stored 0%) adding: extdata/gol_F1_clutch_1_embryo_6_s.bam.bai (332 bytes security) (deflated 99%) adding: extdata/gol_F1_clutch_1_embryo_7_s.bam (332 bytes security) (stored 0%) adding: extdata/gol_F1_clutch_1_embryo_7_s.bam.bai (332 bytes security) (deflated 99%) adding: extdata/gol_F1_clutch_1_embryo_8_s.bam (332 bytes security) (stored 0%) adding: extdata/gol_F1_clutch_1_embryo_8_s.bam.bai (332 bytes security) (deflated 100%) adding: extdata/gol_F1_clutch_2_embryo_4_s.bam (332 bytes security) (stored 0%) adding: extdata/gol_F1_clutch_2_embryo_4_s.bam.bai (332 bytes security) (deflated 100%) adding: extdata/gol_F1_metadata.txt (332 bytes security) (deflated 83%) adding: extdata/gol_F1_metadata_small.txt (332 bytes security) (deflated 73%) adding: extdata/GRCz10_81_ptena_txdb.sqlite (332 bytes security) (deflated 87%) adding: extdata/IM2033.ab1 (332 bytes security) (deflated 57%) adding: extdata/metadata/ (372 bytes security) (stored 0%) adding: extdata/metadata/metadata.xls (332 bytes security) (deflated 71%) adding: extdata/ptena_GRCHz10_ref.rda (332 bytes security) (stored 0%) adding: extdata/wtx_Sanger.png (332 bytes security) (deflated 4%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 77%) adding: help/CrispRVariants.rdb (332 bytes security) (deflated 3%) adding: help/CrispRVariants.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 82%) adding: html/abifToFastq.html (332 bytes security) (deflated 57%) adding: html/addClipped.html (332 bytes security) (deflated 50%) adding: html/addCodonFrame.html (332 bytes security) (deflated 52%) adding: html/alns.html (332 bytes security) (deflated 48%) adding: html/annotateGenePlot.html (332 bytes security) (deflated 59%) adding: html/arrangePlots.html (332 bytes security) (deflated 59%) adding: html/barplotAlleleFreqs.html (332 bytes security) (deflated 65%) adding: html/collapsePairs.html (332 bytes security) (deflated 55%) adding: html/consensusSeqs.html (332 bytes security) (deflated 55%) adding: html/CrisprRun-class.html (332 bytes security) (deflated 60%) adding: html/CrisprSet-class.html (332 bytes security) (deflated 67%) adding: html/dispatchDots.html (332 bytes security) (deflated 53%) adding: html/excludeFromBam.html (332 bytes security) (deflated 52%) adding: html/findChimeras.html (332 bytes security) (deflated 53%) adding: html/findSNVs.html (332 bytes security) (deflated 51%) adding: html/getChimeras.html (332 bytes security) (deflated 52%) adding: html/gol_clutch1.html (332 bytes security) (deflated 47%) adding: html/indelCounts.html (332 bytes security) (deflated 66%) adding: html/makeAlignmentTilePlot.html (332 bytes security) (deflated 58%) adding: html/mergeChimeras.html (332 bytes security) (deflated 56%) adding: html/mergeCrisprSets.html (332 bytes security) (deflated 60%) adding: html/mutationEfficiency.html (332 bytes security) (deflated 59%) adding: html/narrowAlignments.html (332 bytes security) (deflated 57%) adding: html/plotAlignments.html (332 bytes security) (deflated 71%) adding: html/plotChimeras.html (332 bytes security) (deflated 60%) adding: html/plotFreqHeatmap.html (332 bytes security) (deflated 66%) adding: html/plotVariants.html (332 bytes security) (deflated 57%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/rcAlns.html (332 bytes security) (deflated 52%) adding: html/readsByPCRPrimer.html (332 bytes security) (deflated 61%) adding: html/readsToTarget.html (332 bytes security) (deflated 69%) adding: html/readTargetBam.html (332 bytes security) (deflated 58%) adding: html/refFromAlns.html (332 bytes security) (deflated 56%) adding: html/reverseCigar.html (332 bytes security) (deflated 47%) adding: html/rmMultiPCRChimera.html (332 bytes security) (deflated 55%) adding: html/seqsToAln.html (332 bytes security) (deflated 58%) adding: html/seqsToPartialAln.html (332 bytes security) (deflated 58%) adding: html/setDNATileColours.html (332 bytes security) (deflated 48%) adding: html/transformAlnsToLong.html (332 bytes security) (deflated 51%) adding: html/variantCounts.html (332 bytes security) (deflated 60%) adding: html/writeFastq.html (332 bytes security) (deflated 52%) adding: INDEX (332 bytes security) (deflated 66%) adding: MD5 (332 bytes security) (deflated 53%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 60%) adding: NEWS.Rd (332 bytes security) (deflated 64%) adding: R/ (372 bytes security) (stored 0%) adding: R/CrispRVariants (332 bytes security) (deflated 41%) adding: R/CrispRVariants.rdb (332 bytes security) (deflated 29%) adding: R/CrispRVariants.rdx (332 bytes security) (deflated 2%)