Package: CountClust

Version: 1.4.1

Command: rm -rf CountClust.buildbin-libdir CountClust.Rcheck && mkdir CountClust.buildbin-libdir CountClust.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CountClust.buildbin-libdir CountClust_1.4.1.tar.gz >CountClust.Rcheck\00install.out 2>&1 && cp CountClust.Rcheck\00install.out CountClust-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=CountClust.buildbin-libdir --install="check:CountClust-install.out" --force-multiarch --no-vignettes --timings CountClust_1.4.1.tar.gz

StartedAt: 2018-04-11 23:14:37 -0400 (Wed, 11 Apr 2018)

EndedAt: 2018-04-11 23:18:31 -0400 (Wed, 11 Apr 2018)

EllapsedTime: 234.6 seconds

RetCode: 0

Status:  OK

CheckDir: CountClust.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf CountClust.buildbin-libdir CountClust.Rcheck && mkdir CountClust.buildbin-libdir CountClust.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CountClust.buildbin-libdir CountClust_1.4.1.tar.gz >CountClust.Rcheck\00install.out 2>&1 && cp CountClust.Rcheck\00install.out CountClust-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=CountClust.buildbin-libdir --install="check:CountClust-install.out" --force-multiarch --no-vignettes --timings CountClust_1.4.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/CountClust.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CountClust/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CountClust' version '1.4.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CountClust' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 18.5Mb
  sub-directories of 1Mb or more:
    data  17.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'SQUAREM'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
ExtractHighCorFeatures 15.23   0.23   15.75
compGoM                 7.48   0.45    7.95
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
ExtractHighCorFeatures 23.79   0.14   24.04
compGoM                 7.33   0.59    8.00
StructureGGplot         6.14   0.25    7.34
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/CountClust.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'CountClust' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'CountClust'
    finding HTML links ... done
    AbundanceGoM                            html  
    BatchCorrectedCounts                    html  
    ExtractHighCorFeatures                  html  
    ExtractTopFeatures                      html  
    FitGoM                                  html  
    FitGoMpool                              html  
    GTExV6Brain.FitGoM                      html  
    MouseDeng2014.FitGoM                    html  
    MouseJaitinSpleen.FitGoM                html  
    RemoveSparseFeatures                    html  
    StructureGGplot                         html  
    Structure_omega                         html  
    cg_topics                               html  
    compGoM                                 html  
    compare_omega                           html  
    ex.counts                               html  
    handleNA                                html  
    nullmodel_GoM                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'CountClust' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CountClust' as CountClust_1.4.1.zip
* DONE (CountClust)
In R CMD INSTALL
In R CMD INSTALL