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BioC 3.6: CHECK report for mogsa on tokay1

This page was generated on 2017-08-16 13:34:25 -0400 (Wed, 16 Aug 2017).

Package 853/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mogsa 1.11.0
Chen Meng
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mogsa
Last Changed Rev: 129129 / Revision: 131943
Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: mogsa
Version: 1.11.0
Command: rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.11.0.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.11.0.tar.gz
StartedAt: 2017-08-16 00:58:46 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 01:02:22 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 216.2 seconds
RetCode: 0
Status:  OK  
CheckDir: mogsa.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.11.0.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/mogsa.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mogsa/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mogsa' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mogsa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

mogsa.Rcheck/00install.out:


install for i386

* installing *source* package 'mogsa' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'mogsa' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mogsa' as mogsa_1.11.0.zip
* DONE (mogsa)

mogsa.Rcheck/examples_i386/mogsa-Ex.timings:

nameusersystemelapsed
GIS1.000.021.02
annotate.gs0.280.000.28
bootMbpca000
box.gs.feature0.610.010.63
combine-methods0.510.020.53
decompose.gs.group0.630.000.62
decompose.gs.ind0.170.010.19
distMoa0.310.000.31
getmgsa0.530.020.55
matpower0.020.000.02
mbpca3.350.013.36
mgsa-class0.530.000.53
moGap1.190.001.19
moa-class0.370.020.39
moa0.190.000.19
moa.sup-class0.120.000.12
moaCoef0.360.000.36
moaScore0.630.000.63
mogsa-package0.480.010.50
mogsa0.50.00.5
pairwise.rv0.020.000.01
plotGS0.420.000.42
prepGraphite0.140.001.47
prepMsigDB000
prepSupMoa2.110.082.19
softK000
sup.moa0.420.000.42
wsvd000

mogsa.Rcheck/examples_x64/mogsa-Ex.timings:

nameusersystemelapsed
GIS0.690.030.72
annotate.gs0.280.000.28
bootMbpca000
box.gs.feature0.560.000.56
combine-methods0.190.000.19
decompose.gs.group0.720.010.73
decompose.gs.ind0.110.020.13
distMoa0.550.000.54
getmgsa0.110.000.11
matpower000
mbpca2.900.022.92
mgsa-class0.540.000.54
moGap1.180.031.21
moa-class0.110.000.11
moa0.190.000.19
moa.sup-class0.090.000.09
moaCoef0.210.050.25
moaScore0.250.000.25
mogsa-package0.560.000.57
mogsa0.640.000.64
pairwise.rv000
plotGS0.140.000.14
prepGraphite0.070.030.10
prepMsigDB000
prepSupMoa1.870.081.95
softK0.020.000.01
sup.moa0.330.000.33
wsvd000