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BioC 3.6: INSTALL report for minet on tokay1

This page was generated on 2017-08-16 13:28:07 -0400 (Wed, 16 Aug 2017).

Package 832/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
minet 3.35.0
Patrick E. Meyer
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/minet
Last Changed Rev: 129129 / Revision: 131943
Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: minet
Version: 3.35.0
Command: rm -rf minet.buildbin-libdir && mkdir minet.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/minet_3.35.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=minet.buildbin-libdir --merge-multiarch minet_3.35.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL minet_3.35.0.zip && rm minet_3.35.0.tar.gz minet_3.35.0.zip
StartedAt: 2017-08-15 18:15:59 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:16:33 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 33.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf minet.buildbin-libdir && mkdir minet.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/minet_3.35.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=minet.buildbin-libdir --merge-multiarch minet_3.35.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL minet_3.35.0.zip  && rm minet_3.35.0.tar.gz minet_3.35.0.zip
###
##############################################################################
##############################################################################


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100 57441  100 57441    0     0  1400k      0 --:--:-- --:--:-- --:--:-- 1516k

install for i386

* installing *source* package 'minet' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c aracne.cpp -o aracne.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c clr.cpp -o clr.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c minet.cpp -o minet.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c mrnet.cpp -o mrnet.o
mrnet.cpp: In function 'SEXPREC* mrnet(SEXP, SEXP)':
mrnet.cpp:190:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                   for( int l=0; l<n; ++l )  
                                  ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c validate.cpp -o validate.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o minet.dll tmp.def aracne.o clr.o minet.o mrnet.o validate.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/minet.buildbin-libdir/minet/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'minet' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c aracne.cpp -o aracne.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c clr.cpp -o clr.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c minet.cpp -o minet.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c mrnet.cpp -o mrnet.o
mrnet.cpp: In function 'SEXPREC* mrnet(SEXP, SEXP)':
mrnet.cpp:190:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                   for( int l=0; l<n; ++l )  
                                  ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c validate.cpp -o validate.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o minet.dll tmp.def aracne.o clr.o minet.o mrnet.o validate.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/minet.buildbin-libdir/minet/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'minet' as minet_3.35.0.zip
* DONE (minet)
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'minet' successfully unpacked and MD5 sums checked