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BioC 3.6: INSTALL report for microRNA on tokay1

This page was generated on 2017-08-16 13:28:13 -0400 (Wed, 16 Aug 2017).

Package 827/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
microRNA 1.35.2
"James F. Reid"
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/microRNA
Last Changed Rev: 131438 / Revision: 131943
Last Changed Date: 2017-07-20 13:29:55 -0400 (Thu, 20 Jul 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: microRNA
Version: 1.35.2
Command: rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/microRNA_1.35.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=microRNA.buildbin-libdir --merge-multiarch microRNA_1.35.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL microRNA_1.35.2.zip && rm microRNA_1.35.2.tar.gz microRNA_1.35.2.zip
StartedAt: 2017-08-15 18:27:02 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:27:49 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 47.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/microRNA_1.35.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=microRNA.buildbin-libdir --merge-multiarch microRNA_1.35.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL microRNA_1.35.2.zip  && rm microRNA_1.35.2.tar.gz microRNA_1.35.2.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 5886k  100 5886k    0     0  31.7M      0 --:--:-- --:--:-- --:--:-- 32.2M

install for i386

* installing *source* package 'microRNA' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (i == len[index] - 1) { // ignore null termination character
               ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o microRNA.dll tmp.def longest_common_substring.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/microRNA.buildbin-libdir/microRNA/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'microRNA' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (i == len[index] - 1) { // ignore null termination character
               ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o microRNA.dll tmp.def longest_common_substring.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/microRNA.buildbin-libdir/microRNA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'microRNA' as microRNA_1.35.2.zip
* DONE (microRNA)
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'microRNA' successfully unpacked and MD5 sums checked