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BioC 3.6: CHECK report for miRBaseConverter on tokay1

This page was generated on 2017-08-16 13:38:03 -0400 (Wed, 16 Aug 2017).

Package 837/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRBaseConverter 0.99.12
Taosheng Xu
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/miRBaseConverter
Last Changed Rev: 131760 / Revision: 131943
Last Changed Date: 2017-08-05 00:52:08 -0400 (Sat, 05 Aug 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: miRBaseConverter
Version: 0.99.12
Command: rm -rf miRBaseConverter.buildbin-libdir miRBaseConverter.Rcheck && mkdir miRBaseConverter.buildbin-libdir miRBaseConverter.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRBaseConverter.buildbin-libdir miRBaseConverter_0.99.12.tar.gz >miRBaseConverter.Rcheck\00install.out 2>&1 && cp miRBaseConverter.Rcheck\00install.out miRBaseConverter-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=miRBaseConverter.buildbin-libdir --install="check:miRBaseConverter-install.out" --force-multiarch --no-vignettes --timings miRBaseConverter_0.99.12.tar.gz
StartedAt: 2017-08-16 00:54:38 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 00:56:08 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 90.6 seconds
RetCode: 0
Status:  OK  
CheckDir: miRBaseConverter.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf miRBaseConverter.buildbin-libdir miRBaseConverter.Rcheck && mkdir miRBaseConverter.buildbin-libdir miRBaseConverter.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRBaseConverter.buildbin-libdir miRBaseConverter_0.99.12.tar.gz >miRBaseConverter.Rcheck\00install.out 2>&1 && cp miRBaseConverter.Rcheck\00install.out miRBaseConverter-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=miRBaseConverter.buildbin-libdir --install="check:miRBaseConverter-install.out" --force-multiarch --no-vignettes --timings miRBaseConverter_0.99.12.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/miRBaseConverter.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'miRBaseConverter/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'miRBaseConverter' version '0.99.12'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'miRBaseConverter' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

miRBaseConverter.Rcheck/00install.out:


install for i386

* installing *source* package 'miRBaseConverter' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'miRBaseConverter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'miRBaseConverter' as miRBaseConverter_0.99.12.zip
* DONE (miRBaseConverter)

miRBaseConverter.Rcheck/examples_i386/miRBaseConverter-Ex.timings:

nameusersystemelapsed
checkMiRNAAlive2.790.062.86
checkMiRNAFamliy2.890.012.90
checkMiRNAVersion0.060.000.06
getAllMiRNAs0.270.000.27
getAllSpecies000
getAllVersionInfo000
getMiRNAHistory1.090.001.09
getMiRNASequence3.470.023.48
getMiRNATable000
goTo_miRBase3.160.053.24
goTo_miRNAFamily1.100.031.16
miRNATest000
miRNAVersionConvert3.610.013.62
miRNA_AccessionToName1.410.001.41
miRNA_MatureToPrecursor0.160.000.15
miRNA_NameToAccession2.590.022.61
miRNA_PrecursorToMature0.080.000.08

miRBaseConverter.Rcheck/examples_x64/miRBaseConverter-Ex.timings:

nameusersystemelapsed
checkMiRNAAlive3.830.033.85
checkMiRNAFamliy3.310.013.33
checkMiRNAVersion0.120.000.12
getAllMiRNAs0.180.000.18
getAllSpecies000
getAllVersionInfo0.010.000.01
getMiRNAHistory1.280.001.28
getMiRNASequence4.280.004.28
getMiRNATable000
goTo_miRBase3.910.104.00
goTo_miRNAFamily1.450.051.50
miRNATest000
miRNAVersionConvert4.50.04.5
miRNA_AccessionToName1.550.001.55
miRNA_MatureToPrecursor0.160.010.17
miRNA_NameToAccession3.260.003.27
miRNA_PrecursorToMature0.280.000.28