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BioC 3.6: INSTALL report for limma on tokay1

This page was generated on 2017-08-16 13:26:12 -0400 (Wed, 16 Aug 2017).

Package 724/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
limma 3.33.7
Gordon Smyth
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/limma
Last Changed Rev: 131655 / Revision: 131943
Last Changed Date: 2017-07-30 02:17:07 -0400 (Sun, 30 Jul 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: limma
Version: 3.33.7
Command: rm -rf limma.buildbin-libdir && mkdir limma.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/limma_3.33.7.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=limma.buildbin-libdir --merge-multiarch limma_3.33.7.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL limma_3.33.7.zip && rm limma_3.33.7.tar.gz limma_3.33.7.zip
StartedAt: 2017-08-15 18:08:31 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:09:17 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 46.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf limma.buildbin-libdir && mkdir limma.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/limma_3.33.7.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=limma.buildbin-libdir --merge-multiarch limma_3.33.7.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL limma_3.33.7.zip  && rm limma_3.33.7.tar.gz limma_3.33.7.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1408k  100 1408k    0     0  9818k      0 --:--:-- --:--:-- --:--:--  9.8M

install for i386

* installing *source* package 'limma' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c normexp.c -o normexp.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c weighted_lowess.c -o weighted_lowess.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o limma.dll tmp.def init.o normexp.o weighted_lowess.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/limma.buildbin-libdir/limma/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'intro.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'limma' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c normexp.c -o normexp.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c weighted_lowess.c -o weighted_lowess.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o limma.dll tmp.def init.o normexp.o weighted_lowess.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/limma.buildbin-libdir/limma/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'limma' as limma_3.33.7.zip
* DONE (limma)
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'limma' successfully unpacked and MD5 sums checked