BioC 3.6: CHECK report for imageHTS on tokay1

Package: imageHTS

Version: 1.27.0

Command: C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.27.0.tar.gz

StartedAt: 2017-08-16 00:16:55 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 00:20:04 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 188.8 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.27.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/imageHTS.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'imageHTS/DESCRIPTION' ... OK
* this is package 'imageHTS' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'imageHTS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
extractFeatures 14.59   1.28   15.87
countObjects     8.70   0.64    9.69
segmentWells     5.64   0.72    6.35
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/imageHTS.Rcheck/00check.log'
for details.

* installing *source* package 'imageHTS' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0	0	0
countObjects	8.70	0.64	9.69
extractFeatures	14.59	1.28	15.87
fileHTS	1.73	0.01	2.44
getImageConf	0.83	0.00	0.83
getUnames	2.06	0.00	2.06
getWellFeatures	2.55	0.00	2.61
highlightSegmentation	0	0	0
installCellPicker	1.31	0.00	1.33
makeCellHTS	0	0	0
parseDCF	0	0	0
parseImageConf	0.89	0.00	0.89
popCellPicker	0.82	0.00	0.81
prw2uname	0.01	0.00	0.02
readLearnTS	0	0	0
segmentATH	0	0	0
segmentWells	5.64	0.72	6.35
segmentYeastBF	2.13	0.80	2.93
summarizeWells	0	0	0
zprime	2.39	0.02	2.45