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BioC 3.6: CHECK report for iCheck on tokay1

This page was generated on 2017-08-16 13:35:12 -0400 (Wed, 16 Aug 2017).

Package 658/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iCheck 1.7.0
Weiliang Qiu
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/iCheck
Last Changed Rev: 129129 / Revision: 131943
Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: iCheck
Version: 1.7.0
Command: rm -rf iCheck.buildbin-libdir iCheck.Rcheck && mkdir iCheck.buildbin-libdir iCheck.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=iCheck.buildbin-libdir iCheck_1.7.0.tar.gz >iCheck.Rcheck\00install.out 2>&1 && cp iCheck.Rcheck\00install.out iCheck-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=iCheck.buildbin-libdir --install="check:iCheck-install.out" --force-multiarch --no-vignettes --timings iCheck_1.7.0.tar.gz
StartedAt: 2017-08-16 00:14:47 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 00:20:51 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 364.2 seconds
RetCode: 0
Status:  OK  
CheckDir: iCheck.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf iCheck.buildbin-libdir iCheck.Rcheck && mkdir iCheck.buildbin-libdir iCheck.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=iCheck.buildbin-libdir iCheck_1.7.0.tar.gz >iCheck.Rcheck\00install.out 2>&1 && cp iCheck.Rcheck\00install.out iCheck-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=iCheck.buildbin-libdir --install="check:iCheck-install.out" --force-multiarch --no-vignettes --timings iCheck_1.7.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/iCheck.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'iCheck/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'iCheck' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'iCheck' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

iCheck.Rcheck/00install.out:


install for i386

* installing *source* package 'iCheck' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'iCheck' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iCheck' as iCheck_1.7.0.zip
* DONE (iCheck)

iCheck.Rcheck/examples_i386/iCheck-Ex.timings:

nameusersystemelapsed
LumiBatch2Table0.170.000.17
R2PlotFunc0.860.030.89
boxPlots0.210.000.21
densityPlots0.120.030.15
genSimData.BayesNormal0.030.000.03
getPCAFunc0.050.020.07
glmWrapper0.500.060.56
lkhrWrapper0.660.000.66
lmFitPaired0.50.00.5
lmFitWrapper0.110.000.11
pca2DPlot0.170.000.17
pca3DPlot0.030.000.03
plotCurves0.050.000.05
plotQCCurves0.080.000.08
plotSamplep95p050.080.000.08
quantilePlot0.070.000.07
scatterPlots0.110.020.13
sortExpressionSet0.070.000.06

iCheck.Rcheck/examples_x64/iCheck-Ex.timings:

nameusersystemelapsed
LumiBatch2Table0.790.000.78
R2PlotFunc0.280.030.31
boxPlots0.220.000.22
densityPlots0.110.000.11
genSimData.BayesNormal0.030.000.03
getPCAFunc0.050.000.05
glmWrapper0.470.000.47
lkhrWrapper0.680.000.67
lmFitPaired0.640.000.64
lmFitWrapper0.090.000.09
pca2DPlot0.160.000.16
pca3DPlot0.060.000.06
plotCurves0.050.000.05
plotQCCurves0.090.000.09
plotSamplep95p050.090.000.09
quantilePlot0.080.000.08
scatterPlots0.090.020.11
sortExpressionSet0.070.000.06