coMET 1.9.0
Tiphaine Martin
| Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/coMET | | Last Changed Rev: 129129 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | [ OK ] | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | WARNINGS | OK | |
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### Running command:
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### cd coMET.buildbin-libdir/coMET && zip -r ../../coMET_1.9.0.zip . & cd ../..
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adding: CITATION (332 bytes security) (deflated 70%)
adding: data/ (372 bytes security) (stored 0%)
adding: data/allIG.rda (332 bytes security) (deflated 0%)
adding: data/allIGtrack.rda (332 bytes security) (deflated 0%)
adding: data/allimprintedIG.rda (332 bytes security) (deflated 0%)
adding: data/allimprintedIGtrack.rda (332 bytes security) (deflated 0%)
adding: data/BindingMotifAll.rda (332 bytes security) (stored 0%)
adding: data/BindingMotifMultiple.rda (332 bytes security) (stored 0%)
adding: data/bindingMotifsBiomartAll.rda (332 bytes security) (stored 0%)
adding: data/bindingMotifsBiomartMultiple.rda (332 bytes security) (stored 0%)
adding: data/bindingMotifsBiomartSingle.rda (332 bytes security) (stored 0%)
adding: data/BindingMotifSingle.rda (332 bytes security) (stored 0%)
adding: data/bindMotifsBiomartTrackAll.rda (332 bytes security) (stored 0%)
adding: data/bindMotifsBiomartTrackMultiple.rda (332 bytes security) (stored 0%)
adding: data/bindMotifsBiomartTrackSingle.rda (332 bytes security) (stored 0%)
adding: data/chipTFtrack.rda (332 bytes security) (deflated 3%)
adding: data/chipTFtrack_old.rda (332 bytes security) (deflated 3%)
adding: data/chromatinHMMRoadMapAll.rda (332 bytes security) (stored 0%)
adding: data/chromatinHMMRoadMapMultiple.rda (332 bytes security) (stored 0%)
adding: data/chromatinHMMRoadMapSingle.rda (332 bytes security) (stored 0%)
adding: data/chromhmmNoPattern.rda (332 bytes security) (stored 0%)
adding: data/chromhmmPattern.rda (332 bytes security) (stored 0%)
adding: data/chromhmmtrackone.rda (332 bytes security) (stored 0%)
adding: data/chromHMM_RoadMapAll.rda (332 bytes security) (stored 0%)
adding: data/chromHMM_RoadMapAllE063.rda (332 bytes security) (stored 0%)
adding: data/chromHMM_RoadMapMultiple.rda (332 bytes security) (stored 0%)
adding: data/chromHMM_RoadMapSingle.rda (332 bytes security) (stored 0%)
adding: data/ClinVarCnvTrack.rda (332 bytes security) (stored 0%)
adding: data/clinVarMaintrack.rda (332 bytes security) (stored 0%)
adding: data/CoreillCNVTrack.rda (332 bytes security) (stored 0%)
adding: data/coreilVarianttrack.rda (332 bytes security) (stored 0%)
adding: data/cosmicVarianttrack.rda (332 bytes security) (stored 0%)
adding: data/cpgIslandsUCSC.rda (332 bytes security) (stored 0%)
adding: data/cpgIslandtrack.rda (332 bytes security) (stored 0%)
adding: data/datalist (332 bytes security) (deflated 75%)
adding: data/dgfootprints_RoadMapSingle.rda (332 bytes security) (deflated 0%)
adding: data/DNaseI_RoadMapSingle.rda (332 bytes security) (deflated 0%)
adding: data/dnasetrack.rda (332 bytes security) (stored 0%)
adding: data/DupTrack.rda (332 bytes security) (stored 0%)
adding: data/dyaRM.rda (332 bytes security) (deflated 0%)
adding: data/dyaRMtrack.rda (332 bytes security) (stored 0%)
adding: data/eGTexTrackall.rda (332 bytes security) (stored 0%)
adding: data/eGTexTrackSNP.rda (332 bytes security) (stored 0%)
adding: data/enhFANTOMtrack.rda (332 bytes security) (deflated 0%)
adding: data/enhRM.rda (332 bytes security) (deflated 0%)
adding: data/enhRMtrack.rda (332 bytes security) (deflated 0%)
adding: data/eQTLAll.rda (332 bytes security) (stored 0%)
adding: data/eQTLMultiple.rda (332 bytes security) (stored 0%)
adding: data/eQTLSingle.rda (332 bytes security) (stored 0%)
adding: data/eQTLTrackAll.rda (332 bytes security) (stored 0%)
adding: data/eQTLTrackMultiple.rda (332 bytes security) (stored 0%)
adding: data/eQTLTrackSingle.rda (332 bytes security) (stored 0%)
adding: data/gadtrack.rda (332 bytes security) (stored 0%)
adding: data/gcContent.rda (332 bytes security) (deflated 12%)
adding: data/gctrack.rda (332 bytes security) (deflated 12%)
adding: data/geneENSEMBLtrack.rda (332 bytes security) (deflated 0%)
adding: data/geneNameEnsembl.rda (332 bytes security) (stored 0%)
adding: data/GeneReviewsTrack.rda (332 bytes security) (stored 0%)
adding: data/GeneReviewTrack.rda (332 bytes security) (stored 0%)
adding: data/genesENSEMBL.rda (332 bytes security) (deflated 0%)
adding: data/genesGencodetrack.rda (332 bytes security) (deflated 0%)
adding: data/genesNameENSEMBL.rda (332 bytes security) (stored 0%)
adding: data/genesUcsctrack.rda (332 bytes security) (stored 0%)
adding: data/genetrack4psiGTEX.rda (332 bytes security) (deflated 0%)
adding: data/genetrack4RM.rda (332 bytes security) (deflated 0%)
adding: data/grtrack4eGTex.rda (332 bytes security) (deflated 0%)
adding: data/GWASTrack.rda (332 bytes security) (stored 0%)
adding: data/histonalltrack.rda (332 bytes security) (deflated 3%)
adding: data/histoneonetrack.rda (332 bytes security) (stored 0%)
adding: data/imprintedGenesGTEx.rda (332 bytes security) (stored 0%)
adding: data/interestGenesENSEMBL.rda (332 bytes security) (deflated 0%)
adding: data/interestgenesENSMBLtrack.rda (332 bytes security) (deflated 0%)
adding: data/interestTranscriptENSEMBL.rda (332 bytes security) (deflated 0%)
adding: data/interesttransENSMBLtrack.rda (332 bytes security) (deflated 0%)
adding: data/ISCAtrack.rda (332 bytes security) (stored 0%)
adding: data/ISCAtrack_Grch38.rda (332 bytes security) (stored 0%)
adding: data/knownGenesUCSC.rda (332 bytes security) (stored 0%)
adding: data/matrix_HiC_Rao.rda (332 bytes security) (stored 0%)
adding: data/metQTLSingle.rda (332 bytes security) (stored 0%)
adding: data/metQTLTrackAll.rda (332 bytes security) (stored 0%)
adding: data/metQTLTrackMultiple.rda (332 bytes security) (stored 0%)
adding: data/metQTLTrackSingle.rda (332 bytes security) (stored 0%)
adding: data/miRNATargetRegionsBiomart.rda (332 bytes security) (stored 0%)
adding: data/miRNATargetRegionsBiomartTrack.rda (332 bytes security) (stored 0%)
adding: data/OtherRegulatoryRegionsAll.rda (332 bytes security) (stored 0%)
adding: data/OtherRegulatoryRegionsSingle.rda (332 bytes security) (stored 0%)
adding: data/otherRegulatoryRegionsTrackAll.rda (332 bytes security) (stored 0%)
adding: data/otherRegulatoryRegionsTrackSingle.rda (332 bytes security) (stored 0%)
adding: data/PancreasIG.rda (332 bytes security) (deflated 0%)
adding: data/PancreasIGtrack.rda (332 bytes security) (deflated 0%)
adding: data/PancreasimprintedIG.rda (332 bytes security) (stored 0%)
adding: data/PancreasimprintedIGtrack.rda (332 bytes security) (stored 0%)
adding: data/promRMtrack.rda (332 bytes security) (deflated 0%)
adding: data/promRMtrackE063.rda (332 bytes security) (deflated 0%)
adding: data/psiGTex.rda (332 bytes security) (deflated 3%)
adding: data/psiGTexTrackall.rda (332 bytes security) (deflated 3%)
adding: data/psiGTexTrackSNP.rda (332 bytes security) (deflated 1%)
adding: data/refGenesUCSC.rda (332 bytes security) (stored 0%)
adding: data/regulationENSEMBLtrack.rda (332 bytes security) (stored 0%)
adding: data/RegulatoryEvidenceBiomartAll.rda (332 bytes security) (stored 0%)
adding: data/RegulatoryEvidenceBiomartMultiple.rda (332 bytes security) (stored 0%)
adding: data/RegulatoryEvidenceBiomartSingle.rda (332 bytes security) (deflated 2%)
adding: data/regulatoryEvidenceBiomartTrackAll.rda (332 bytes security) (stored 0%)
adding: data/regulatoryEvidenceBiomartTrackMultiple.rda (332 bytes security) (stored 0%)
adding: data/regulatoryEvidenceBiomartTrackSingle.rda (332 bytes security) (stored 0%)
adding: data/RegulatoryFeaturesBiomartAll.rda (332 bytes security) (stored 0%)
adding: data/RegulatoryFeaturesBiomartMultiple.rda (332 bytes security) (stored 0%)
adding: data/RegulatoryFeaturesBiomartSingle.rda (332 bytes security) (stored 0%)
adding: data/regulatoryFeaturesBiomartTrackAll.rda (332 bytes security) (stored 0%)
adding: data/regulatoryFeaturesBiomartTrackMultiple.rda (332 bytes security) (stored 0%)
adding: data/regulatoryFeaturesBiomartTrackSingle.rda (332 bytes security) (stored 0%)
adding: data/RegulatorySegmentsBiomartAll.rda (332 bytes security) (stored 0%)
adding: data/RegulatorySegmentsBiomartMultiple.rda (332 bytes security) (stored 0%)
adding: data/RegulatorySegmentsBiomartSingle.rda (332 bytes security) (stored 0%)
adding: data/regulatorySegmentsBiomartTrackAll.rda (332 bytes security) (stored 0%)
adding: data/regulatorySegmentsBiomartTrackMultiple.rda (332 bytes security) (stored 0%)
adding: data/regulatorySegmentsBiomartTrackSingle.rda (332 bytes security) (stored 0%)
adding: data/repeatMaskerTrack.rda (332 bytes security) (stored 0%)
adding: data/SegmentalDupsUCSC.rda (332 bytes security) (stored 0%)
adding: data/snpBiomart.rda (332 bytes security) (stored 0%)
adding: data/snpBiomarttrack.rda (332 bytes security) (stored 0%)
adding: data/snptrack.rda (332 bytes security) (stored 0%)
adding: data/snpUCSCtrack.rda (332 bytes security) (deflated 2%)
adding: data/StomachIG.rda (332 bytes security) (stored 0%)
adding: data/StomachIGtrack.rda (332 bytes security) (stored 0%)
adding: data/strucBiomarttrack.rda (332 bytes security) (stored 0%)
adding: data/structureBiomart.rda (332 bytes security) (stored 0%)
adding: data/tfbsFANTOMtrack.rda (332 bytes security) (stored 0%)
adding: data/transENSMBLtrack.rda (332 bytes security) (deflated 0%)
adding: data/xenogenestrack.rda (332 bytes security) (stored 0%)
adding: data/xenorefGenesUCSC.rda (332 bytes security) (stored 0%)
adding: DESCRIPTION (332 bytes security) (deflated 44%)
adding: doc/ (372 bytes security) (stored 0%)
adding: doc/coMET.pdf (332 bytes security) (deflated 15%)
adding: doc/coMET.R (332 bytes security) (deflated 83%)
adding: doc/coMET.Rnw (332 bytes security) (deflated 75%)
adding: doc/index.html (332 bytes security) (deflated 57%)
adding: extdata/ (372 bytes security) (stored 0%)
adding: extdata/config_cyp1b1_zoom.txt (332 bytes security) (deflated 54%)
adding: extdata/config_cyp1b1_zoom_4comet.txt (332 bytes security) (deflated 46%)
adding: extdata/config_cyp1b1_zoom_4cometnopval.txt (332 bytes security) (deflated 40%)
adding: extdata/config_cyp1b1_zoom_4cometnopval_Grch38.txt (332 bytes security) (deflated 47%)
adding: extdata/config_cyp1b1_zoom_4nomatrix.txt (332 bytes security) (deflated 47%)
adding: extdata/config_cyp1b1_zoom_4nomatrix_Grch38.txt (332 bytes security) (deflated 47%)
adding: extdata/config_cyp1b1_zoom_4webserver.txt (332 bytes security) (deflated 45%)
adding: extdata/config_cyp1b1_zoom_4webserver_Grch38.txt (332 bytes security) (deflated 46%)
adding: extdata/config_gata55_larger_article.txt (332 bytes security) (deflated 54%)
adding: extdata/config_gata55_larger_article_rev.txt (332 bytes security) (deflated 54%)
adding: extdata/cyp1b1_infofile.bed (332 bytes security) (deflated 64%)
adding: extdata/cyp1b1_infofile.txt (332 bytes security) (deflated 53%)
adding: extdata/cyp1b1_infofile_bed.txt (332 bytes security) (deflated 64%)
adding: extdata/cyp1b1_infofile_bed_v2.bed (332 bytes security) (deflated 70%)
adding: extdata/cyp1b1_infofile_bed_v2.txt (332 bytes security) (deflated 70%)
adding: extdata/cyp1b1_infofile_bed_v2_hg38.bed (332 bytes security) (deflated 79%)
adding: extdata/cyp1b1_infofile_bed_v3.bed (332 bytes security) (deflated 75%)
adding: extdata/cyp1b1_infofile_bed_v3.txt (332 bytes security) (deflated 80%)
adding: extdata/cyp1b1_infofile_bed_v3_hg38.bed (332 bytes security) (deflated 74%)
adding: extdata/cyp1b1_infofile_exprGene_region.txt (332 bytes security) (deflated 45%)
adding: extdata/cyp1b1_infofile_exprGene_region_Grch38.txt (332 bytes security) (deflated 41%)
adding: extdata/cyp1b1_infofile_exprGene_region_v2.csv (332 bytes security) (deflated 45%)
adding: extdata/cyp1b1_infofile_Grch38.txt (332 bytes security) (deflated 55%)
adding: extdata/cyp1b1_res37_cormatrix_list_BH05.txt (332 bytes security) (deflated 58%)
adding: extdata/cyp1b1_res37_rawMatrix.txt (332 bytes security) (deflated 54%)
adding: extdata/cyp1b1_zoom_plus_name_expr.pdf (332 bytes security) (deflated 9%)
adding: extdata/datalist (332 bytes security) (deflated 32%)
adding: extdata/gata4_55probes_info.txt (332 bytes security) (deflated 54%)
adding: extdata/gata4_55probes_rawMatrix.txt (332 bytes security) (deflated 56%)
adding: extdata/gata4_55probes_residuals.txt (332 bytes security) (deflated 56%)
adding: extdata/gata4_95probes_info.txt (332 bytes security) (deflated 54%)
adding: extdata/gata_comet_55probes_large_article.eps (332 bytes security) (deflated 92%)
adding: extdata/gata_comet_55probes_large_article_gene.eps (332 bytes security) (deflated 92%)
adding: extdata/gata_comet_55probes_large_article_rev.eps (332 bytes security) (deflated 92%)
adding: extdata/JpegTables/ (372 bytes security) (stored 0%)
adding: extdata/JpegTables/bindingMotifBiomart.jpg (332 bytes security) (deflated 9%)
adding: extdata/JpegTables/BindingMotifsBiomart.jpg (332 bytes security) (deflated 6%)
adding: extdata/JpegTables/ChromHMM.jpg (332 bytes security) (deflated 26%)
adding: extdata/JpegTables/ChromHMM_coMET.jpg (332 bytes security) (deflated 14%)
adding: extdata/JpegTables/ChromHMM_UCSC.jpg (332 bytes security) (deflated 8%)
adding: extdata/JpegTables/eQTL.jpg (332 bytes security) (deflated 19%)
adding: extdata/JpegTables/ISCATrack.jpg (332 bytes security) (deflated 27%)
adding: extdata/JpegTables/ISCATrack_old.jpg (332 bytes security) (deflated 20%)
adding: extdata/JpegTables/metQTL.jpg (332 bytes security) (deflated 21%)
adding: extdata/JpegTables/OtherRegulatoryRegions.jpg (332 bytes security) (deflated 21%)
adding: extdata/JpegTables/RegulatoryElementsENSEMBL.jpg (332 bytes security) (deflated 26%)
adding: extdata/JpegTables/RegulatoryEvidence_1.jpg (332 bytes security) (deflated 7%)
adding: extdata/JpegTables/RegulatoryEvidence_2.jpg (332 bytes security) (deflated 6%)
adding: extdata/JpegTables/RegulatoryEvidence_3.jpg (332 bytes security) (deflated 12%)
adding: extdata/JpegTables/RegulatoryFeaturesBiomart.jpg (332 bytes security) (deflated 17%)
adding: extdata/JpegTables/RegulatorySegmentsBiomart.jpg (332 bytes security) (deflated 9%)
adding: extdata/JpegTables/RoadMap15_RoadMap.jpg (332 bytes security) (deflated 5%)
adding: extdata/JpegTables/RoadMap18_coMET.jpg (332 bytes security) (deflated 10%)
adding: extdata/JpegTables/RoadMap18_RoadMap.jpg (332 bytes security) (deflated 5%)
adding: extdata/JpegTables/RoadMap25_coMET.jpg (332 bytes security) (deflated 4%)
adding: extdata/JpegTables/RoadMap25_RoadMap.jpg (332 bytes security) (deflated 2%)
adding: extdata/JpegTables/structureBiomart.jpg (332 bytes security) (deflated 12%)
adding: help/ (372 bytes security) (stored 0%)
adding: help/aliases.rds (332 bytes security) (stored 0%)
adding: help/AnIndex (332 bytes security) (deflated 79%)
adding: help/coMET.rdb (332 bytes security) (deflated 2%)
adding: help/coMET.rdx (332 bytes security) (deflated 1%)
adding: help/paths.rds (332 bytes security) (stored 0%)
adding: html/ (372 bytes security) (stored 0%)
adding: html/00Index.html (332 bytes security) (deflated 80%)
adding: html/R.css (332 bytes security) (deflated 75%)
adding: INDEX (332 bytes security) (deflated 77%)
adding: LICENSE (332 bytes security) (deflated 62%)
adding: MD5 (332 bytes security) (deflated 57%)
adding: Meta/ (372 bytes security) (stored 0%)
adding: Meta/data.rds (332 bytes security) (stored 0%)
adding: Meta/features.rds (332 bytes security) (stored 0%)
adding: Meta/hsearch.rds (332 bytes security) (stored 0%)
adding: Meta/links.rds (332 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (332 bytes security) (stored 0%)
adding: Meta/package.rds (332 bytes security) (stored 0%)
adding: Meta/Rd.rds (332 bytes security) (stored 0%)
adding: Meta/vignette.rds (332 bytes security) (stored 0%)
adding: NAMESPACE (332 bytes security) (deflated 70%)
adding: NEWS (332 bytes security) (deflated 66%)
adding: R/ (372 bytes security) (stored 0%)
adding: R/coMET (332 bytes security) (deflated 41%)
adding: R/coMET.rdb (332 bytes security) (deflated 1%)
adding: R/coMET.rdx (332 bytes security) (stored 0%)
adding: unitTests/ (372 bytes security) (stored 0%)
adding: unitTests/ChangeLog.txt (332 bytes security) (stored 0%)
adding: unitTests/Citation.txt (332 bytes security) (deflated 64%)
adding: unitTests/test_chrUCSC2ENSEMBL.R (332 bytes security) (deflated 17%)