SNPRelate 1.11.1
Xiuwen Zheng
| Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SNPRelate | | Last Changed Rev: 129919 / Revision: 131943 | | Last Changed Date: 2017-05-26 16:59:39 -0400 (Fri, 26 May 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf SNPRelate.buildbin-libdir && mkdir SNPRelate.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/SNPRelate_1.11.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=SNPRelate.buildbin-libdir --merge-multiarch SNPRelate_1.11.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL SNPRelate_1.11.1.zip && rm SNPRelate_1.11.1.tar.gz SNPRelate_1.11.1.zip
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install for i386
* installing *source* package 'SNPRelate' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c ConvToGDS.cpp -o ConvToGDS.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_SNPRelate.c -o R_SNPRelate.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c SNPRelate.cpp -o SNPRelate.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c ThreadPool.cpp -o ThreadPool.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c dGenGWAS.cpp -o dGenGWAS.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c dVect.cpp -o dVect.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genBeta.cpp -o genBeta.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genEIGMIX.cpp -o genEIGMIX.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genFst.cpp -o genFst.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genHWE.cpp -o genHWE.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genIBD.cpp -o genIBD.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genIBS.cpp -o genIBS.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genKING.cpp -o genKING.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genLD.cpp -o genLD.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genPCA.cpp -o genPCA.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genSlideWin.cpp -o genSlideWin.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o SNPRelate.dll tmp.def ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lRblas -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lRlapack -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/SNPRelate.buildbin-libdir/SNPRelate/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'SNPRelate' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c ConvToGDS.cpp -o ConvToGDS.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_SNPRelate.c -o R_SNPRelate.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c SNPRelate.cpp -o SNPRelate.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c ThreadPool.cpp -o ThreadPool.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c dGenGWAS.cpp -o dGenGWAS.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c dVect.cpp -o dVect.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genBeta.cpp -o genBeta.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genEIGMIX.cpp -o genEIGMIX.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genFst.cpp -o genFst.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genHWE.cpp -o genHWE.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genIBD.cpp -o genIBD.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genIBS.cpp -o genIBS.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genKING.cpp -o genKING.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genLD.cpp -o genLD.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genPCA.cpp -o genPCA.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DUSING_R -I. -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/gdsfmt/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c genSlideWin.cpp -o genSlideWin.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o SNPRelate.dll tmp.def ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lRblas -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lRlapack -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/SNPRelate.buildbin-libdir/SNPRelate/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SNPRelate' as SNPRelate_1.11.1.zip
* DONE (SNPRelate)
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'SNPRelate' successfully unpacked and MD5 sums checked