Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

BioC 3.6: INSTALL report for Rhdf5lib on tokay1

This page was generated on 2017-08-16 13:38:08 -0400 (Wed, 16 Aug 2017).

Package 1129/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rhdf5lib 0.99.13
Mike Smith
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rhdf5lib
Last Changed Rev: 131294 / Revision: 131943
Last Changed Date: 2017-07-17 16:16:53 -0400 (Mon, 17 Jul 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Rhdf5lib
Version: 0.99.13
Command: rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/Rhdf5lib_0.99.13.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=Rhdf5lib.buildbin-libdir --merge-multiarch Rhdf5lib_0.99.13.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib_0.99.13.zip && rm Rhdf5lib_0.99.13.tar.gz Rhdf5lib_0.99.13.zip
StartedAt: 2017-08-15 18:05:31 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:10:06 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 275.3 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/Rhdf5lib_0.99.13.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=Rhdf5lib.buildbin-libdir --merge-multiarch Rhdf5lib_0.99.13.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib_0.99.13.zip  && rm Rhdf5lib_0.99.13.tar.gz Rhdf5lib_0.99.13.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 6958k  100 6958k    0     0  8596k      0 --:--:-- --:--:-- --:--:-- 8807k

install for i386

* installing *source* package 'Rhdf5lib' ...
untarring hdf5_headers_1.8.19.tar.gz ...
** libs
mkdir -p "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/i386/" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include/c++"
cp "winlib/i386/libhdf5.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/i386/libhdf5.a"
cp "winlib/i386/libhdf5_cpp.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/i386/libhdf5_cpp.a"
cp "winlib/i386/libszip.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/i386/libszip.a"
cp ./hdf5/*.h "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp ./hdf5/c++/*.h "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include/c++"
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I./hdf5   -O3 -Wall  -std=gnu99 -mtune=core2 -c Rhdf5lib.c -o Rhdf5lib.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib/i386/libhdf5.a winlib/i386/libszip.a -lpsapi -lz -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/libs/i386
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'Rhdf5lib' ...
untarring hdf5_headers_1.8.19.tar.gz ...
** libs
mkdir -p "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include/c++"
cp "winlib/x64/libhdf5.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5.a"
cp "winlib/x64/libhdf5_cpp.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_cpp.a"
cp "winlib/x64/libszip.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libszip.a"
cp ./hdf5/*.h "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp ./hdf5/c++/*.h "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include/c++"
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I./hdf5   -O2 -Wall  -std=gnu99 -mtune=core2 -c Rhdf5lib.c -o Rhdf5lib.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib/x64/libhdf5.a winlib/x64/libszip.a -lpsapi -lz -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rhdf5lib' as Rhdf5lib_0.99.13.zip
* DONE (Rhdf5lib)
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'Rhdf5lib' successfully unpacked and MD5 sums checked