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BioC 3.6: CHECK report for RTN on tokay1

This page was generated on 2017-08-16 13:31:46 -0400 (Wed, 16 Aug 2017).

Package 1180/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTN 1.15.2
Mauro Castro
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RTN
Last Changed Rev: 131250 / Revision: 131943
Last Changed Date: 2017-07-15 15:31:24 -0400 (Sat, 15 Jul 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RTN
Version: 1.15.2
Command: rm -rf RTN.buildbin-libdir RTN.Rcheck && mkdir RTN.buildbin-libdir RTN.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTN.buildbin-libdir RTN_1.15.2.tar.gz >RTN.Rcheck\00install.out 2>&1 && cp RTN.Rcheck\00install.out RTN-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RTN.buildbin-libdir --install="check:RTN-install.out" --force-multiarch --no-vignettes --timings RTN_1.15.2.tar.gz
StartedAt: 2017-08-16 02:14:48 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 02:19:30 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 281.7 seconds
RetCode: 0
Status:  OK  
CheckDir: RTN.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RTN.buildbin-libdir RTN.Rcheck && mkdir RTN.buildbin-libdir RTN.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTN.buildbin-libdir RTN_1.15.2.tar.gz >RTN.Rcheck\00install.out 2>&1 && cp RTN.Rcheck\00install.out RTN-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RTN.buildbin-libdir --install="check:RTN-install.out" --force-multiarch --no-vignettes --timings RTN_1.15.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/RTN.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RTN/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RTN' version '1.15.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RTN' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 10.4Mb
  sub-directories of 1Mb or more:
    data   9.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/RTN.Rcheck/00check.log'
for details.


RTN.Rcheck/00install.out:


install for i386

* installing *source* package 'RTN' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RTN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTN' as RTN_1.15.2.zip
* DONE (RTN)

RTN.Rcheck/examples_i386/RTN-Ex.timings:

nameusersystemelapsed
AVS-class000
RTN.data1.080.021.10
TNA-class000
TNI-class1.040.031.08
TNI.data0.470.010.49
avs.evse000
avs.get000
avs.plot1000
avs.plot2000
avs.preprocess.LD1000gRel20130502000
avs.preprocess.LDHapMapRel27000
avs.vse000
tna.get1.050.041.07
tna.graph1.030.011.05
tna.gsea11.040.051.09
tna.gsea21.300.031.33
tna.mra1.060.031.09
tna.overlap1.250.001.25
tna.plot.gsea11.140.001.14
tna.plot.gsea21.270.021.28
tna.shadow1.160.001.16
tna.synergy1.250.021.26
tni.bootstrap1.180.031.22
tni.conditional1.030.031.06
tni.dpi.filter1.220.021.24
tni.get1.420.001.42
tni.graph1.160.011.17
tni.gsea21.490.031.52
tni.permutation1.370.051.42
tni.preprocess2.450.012.47
tni2tna.preprocess1.280.021.30

RTN.Rcheck/examples_x64/RTN-Ex.timings:

nameusersystemelapsed
AVS-class000
RTN.data1.230.061.30
TNA-class000
TNI-class1.170.051.22
TNI.data0.220.000.21
avs.evse000
avs.get000
avs.plot1000
avs.plot2000
avs.preprocess.LD1000gRel20130502000
avs.preprocess.LDHapMapRel27000
avs.vse000
tna.get0.950.010.97
tna.graph0.950.000.95
tna.gsea10.960.020.97
tna.gsea21.200.021.22
tna.mra0.950.000.95
tna.overlap0.940.000.94
tna.plot.gsea10.940.000.94
tna.plot.gsea20.900.010.92
tna.shadow0.910.050.95
tna.synergy0.970.000.97
tni.bootstrap0.900.060.97
tni.conditional0.890.060.95
tni.dpi.filter1.210.051.25
tni.get0.900.050.96
tni.graph0.930.010.93
tni.gsea20.960.000.97
tni.permutation0.930.020.94
tni.preprocess2.140.052.19
tni2tna.preprocess0.900.030.93