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BioC 3.6: INSTALL report for RProtoBufLib on tokay1

This page was generated on 2017-08-16 13:38:08 -0400 (Wed, 16 Aug 2017).

Package 1163/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RProtoBufLib 0.99.5
Mike Jiang
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RProtoBufLib
Last Changed Rev: 131636 / Revision: 131943
Last Changed Date: 2017-07-28 13:25:41 -0400 (Fri, 28 Jul 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ ERROR ] OK  ERROR  ERROR 
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: RProtoBufLib
Version: 0.99.5
Command: rm -rf RProtoBufLib.buildbin-libdir && mkdir RProtoBufLib.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/RProtoBufLib_0.99.5.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=RProtoBufLib.buildbin-libdir --merge-multiarch RProtoBufLib_0.99.5.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL RProtoBufLib_0.99.5.zip && rm RProtoBufLib_0.99.5.tar.gz RProtoBufLib_0.99.5.zip
StartedAt: 2017-08-15 18:05:29 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:05:39 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 9.9 seconds
RetCode: 1
Status:  ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RProtoBufLib.buildbin-libdir && mkdir RProtoBufLib.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/RProtoBufLib_0.99.5.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=RProtoBufLib.buildbin-libdir --merge-multiarch RProtoBufLib_0.99.5.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL RProtoBufLib_0.99.5.zip  && rm RProtoBufLib_0.99.5.tar.gz RProtoBufLib_0.99.5.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  906k  100  906k    0     0  1203k      0 --:--:-- --:--:-- --:--:-- 1233k

install for i386

* installing *source* package 'RProtoBufLib' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
mkdir -p ""C:/Users/biocbuild/bbs-3.6-bioc/meat/RProtoBufLib.buildbin-libdir/RProtoBufLib/include""
cp -r win/include/google "C:/Users/biocbuild/bbs-3.6-bioc/meat/RProtoBufLib.buildbin-libdir/RProtoBufLib/include"
mkdir -p "C:/Users/biocbuild/bbs-3.6-bioc/meat/RProtoBufLib.buildbin-libdir/RProtoBufLib/lib/i386"
cp  win/lib/i386/libprotobuf.a "C:/Users/biocbuild/bbs-3.6-bioc/meat/RProtoBufLib.buildbin-libdir/RProtoBufLib/lib/i386/libprotobuf.a"
cp: cannot stat 'win/lib/i386/libprotobuf.a': No such file or directory
make: *** [copying] Error 1
Warning: running command 'make -f "Makevars.win" -f "C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/etc/i386/Makeconf" -f "C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/share/make/winshlib.mk" SHLIB="RProtoBufLib.dll" OBJECTS="dummy.o"' had status 2
ERROR: compilation failed for package 'RProtoBufLib'
* removing 'C:/Users/biocbuild/bbs-3.6-bioc/meat/RProtoBufLib.buildbin-libdir/RProtoBufLib'
Warning: running command 'C:/Users/biocbuild/bbs-3.6-bioc/R/bin/i386/Rcmd.exe INSTALL --library=RProtoBufLib.buildbin-libdir RProtoBufLib_0.99.5.tar.gz --no-multiarch' had status 1