BioC 3.6: CHECK report for RImmPort on tokay1

Package: RImmPort

Version: 1.5.0

Command: rm -rf RImmPort.buildbin-libdir RImmPort.Rcheck && mkdir RImmPort.buildbin-libdir RImmPort.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RImmPort.buildbin-libdir RImmPort_1.5.0.tar.gz >RImmPort.Rcheck\00install.out 2>&1 && cp RImmPort.Rcheck\00install.out RImmPort-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RImmPort.buildbin-libdir --install="check:RImmPort-install.out" --force-multiarch --no-vignettes --timings RImmPort_1.5.0.tar.gz

StartedAt: 2017-08-16 02:02:48 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 02:04:03 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 74.9 seconds

RetCode: 0

Status:  OK

CheckDir: RImmPort.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RImmPort.buildbin-libdir RImmPort.Rcheck && mkdir RImmPort.buildbin-libdir RImmPort.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RImmPort.buildbin-libdir RImmPort_1.5.0.tar.gz >RImmPort.Rcheck\00install.out 2>&1 && cp RImmPort.Rcheck\00install.out RImmPort-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RImmPort.buildbin-libdir --install="check:RImmPort-install.out" --force-multiarch --no-vignettes --timings RImmPort_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/RImmPort.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RImmPort/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RImmPort' version '1.5.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RImmPort' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'RImmPort' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RImmPort' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RImmPort' as RImmPort_1.5.0.zip
* DONE (RImmPort)

name	user	system	elapsed
Events-class	0.90	0.05	0.95
Findings-class	1.36	0.00	1.36
Interventions-class	0.41	0.00	0.41
SpecialPurpose-class	0.40	0.02	0.42
Study-class	0.39	0.00	0.39
TrialDesign-class	0.35	0.01	0.36
buildNewSqliteDb	0.01	0.00	0.01
getAssayDataOfStudies	0.18	0.02	0.19
getDomainCode	0	0	0
getDomainDataOfStudies	0.04	0.00	0.05
getListOfAssayTypes	0	0	0
getListOfDomains	0	0	0
getListOfStudies	0.03	0.01	0.05
getStudiesWithSpecificAssayData	0.02	0.02	0.03
getStudiesWithSpecificDomainData	0.04	0.00	0.03
getStudy	0.34	0.01	0.36
loadSerializedStudyData	0	0	0
mergeDomainAndSupplemental	0.18	0.02	0.20
serialzeStudyData	1.06	0.02	1.03
setImmPortDataSource	0.05	0.00	0.05

name	user	system	elapsed
Events-class	1.10	0.00	1.09
Findings-class	1.64	0.01	1.66
Interventions-class	0.47	0.02	0.48
SpecialPurpose-class	0.67	0.01	0.68
Study-class	0.41	0.02	0.46
TrialDesign-class	0.42	0.00	0.42
buildNewSqliteDb	0	0	0
getAssayDataOfStudies	0.17	0.00	0.17
getDomainCode	0	0	0
getDomainDataOfStudies	0.05	0.00	0.05
getListOfAssayTypes	0	0	0
getListOfDomains	0	0	0
getListOfStudies	0.04	0.00	0.04
getStudiesWithSpecificAssayData	0.03	0.02	0.05
getStudiesWithSpecificDomainData	0.04	0.00	0.03
getStudy	0.50	0.01	0.52
loadSerializedStudyData	0	0	0
mergeDomainAndSupplemental	0.24	0.00	0.24
serialzeStudyData	1.18	0.03	1.22
setImmPortDataSource	0.07	0.00	0.06