Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O [P] Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.6: BUILD BIN report for PureCN on tokay1

This page was generated on 2017-08-16 13:36:16 -0400 (Wed, 16 Aug 2017).

Package 1046/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PureCN 1.7.44
Markus Riester
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/PureCN
Last Changed Rev: 131662 / Revision: 131943
Last Changed Date: 2017-07-30 15:38:21 -0400 (Sun, 30 Jul 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PureCN
Version: 1.7.44
Command: cd PureCN.buildbin-libdir/PureCN && zip -r ../../PureCN_1.7.44.zip . & cd ../..
StartedAt: 2017-08-16 04:04:12 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 04:04:44 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 32.3 seconds
RetCode: 0
Status:  OK  
PackageFile: PureCN_1.7.44.zip
PackageFileSize: 8.216 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd PureCN.buildbin-libdir/PureCN && zip -r ../../PureCN_1.7.44.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (332 bytes security) (deflated 58%)
  adding: data/ (372 bytes security) (stored 0%)
  adding: data/centromeres.rda (332 bytes security) (stored 0%)
  adding: data/purecn.example.output.rda (332 bytes security) (deflated 0%)
  adding: DESCRIPTION (332 bytes security) (deflated 44%)
  adding: doc/ (372 bytes security) (stored 0%)
  adding: doc/index.html (332 bytes security) (deflated 66%)
  adding: doc/PureCN.pdf (332 bytes security) (deflated 9%)
  adding: doc/PureCN.R (332 bytes security) (deflated 73%)
  adding: doc/PureCN.Rnw (332 bytes security) (deflated 68%)
  adding: doc/Quick.pdf (332 bytes security) (deflated 10%)
  adding: doc/Quick.R (332 bytes security) (deflated 53%)
  adding: doc/Quick.Rnw (332 bytes security) (deflated 70%)
  adding: extdata/ (372 bytes security) (stored 0%)
  adding: extdata/Coverage.R (332 bytes security) (deflated 71%)
  adding: extdata/downloadCentromeres.R (332 bytes security) (deflated 55%)
  adding: extdata/Dx.R (332 bytes security) (deflated 67%)
  adding: extdata/ex1.bam (332 bytes security) (deflated 0%)
  adding: extdata/ex1.bam.bai (332 bytes security) (deflated 63%)
  adding: extdata/ex1_gcgene.txt (332 bytes security) (deflated 31%)
  adding: extdata/ex1_intervals.txt (332 bytes security) (deflated 35%)
  adding: extdata/ex2_intervals.bed (332 bytes security) (deflated 46%)
  adding: extdata/ex2_intervals.txt (332 bytes security) (deflated 34%)
  adding: extdata/ex2_mappability.bed (332 bytes security) (deflated 48%)
  adding: extdata/ex2_mappability.bigWig (332 bytes security) (deflated 98%)
  adding: extdata/ex2_reference.fa (332 bytes security) (deflated 63%)
  adding: extdata/ex2_reference.fa.fai (332 bytes security) (deflated 22%)
  adding: extdata/ex3_intervals.bed (332 bytes security) (deflated 46%)
  adding: extdata/ex3_mappability.bed (332 bytes security) (deflated 49%)
  adding: extdata/ex3_reference.fa (332 bytes security) (deflated 63%)
  adding: extdata/ex3_reference.fa.fai (332 bytes security) (deflated 22%)
  adding: extdata/example_callable.bed.gz (332 bytes security) (deflated 0%)
  adding: extdata/example_cosmic.vcf.gz (332 bytes security) (stored 0%)
  adding: extdata/example_cosmic.vcf.gz.tbi (332 bytes security) (deflated 39%)
  adding: extdata/example_gc.gene.file.txt (332 bytes security) (deflated 70%)
  adding: extdata/example_normal.list (332 bytes security) (deflated 31%)
  adding: extdata/example_normal.txt (332 bytes security) (deflated 59%)
  adding: extdata/example_normal2.txt (332 bytes security) (deflated 59%)
  adding: extdata/example_normal3.cnn (332 bytes security) (deflated 33%)
  adding: extdata/example_normal4.cnr (332 bytes security) (deflated 42%)
  adding: extdata/example_seg.txt (332 bytes security) (deflated 57%)
  adding: extdata/example_tumor.txt (332 bytes security) (deflated 59%)
  adding: extdata/example_vcf.vcf (332 bytes security) (deflated 74%)
  adding: extdata/IntervalFile.R (332 bytes security) (deflated 71%)
  adding: extdata/NormalDB.R (332 bytes security) (deflated 64%)
  adding: extdata/normalpanel.vcf.gz (332 bytes security) (stored 0%)
  adding: extdata/normalpanel.vcf.gz.tbi (332 bytes security) (deflated 44%)
  adding: extdata/PureCN.R (332 bytes security) (deflated 73%)
  adding: extdata/test_coverage_overlapping_intervals.txt (332 bytes security) (deflated 55%)
  adding: help/ (372 bytes security) (stored 0%)
  adding: help/aliases.rds (332 bytes security) (stored 0%)
  adding: help/AnIndex (332 bytes security) (deflated 68%)
  adding: help/paths.rds (332 bytes security) (stored 0%)
  adding: help/PureCN.rdb (332 bytes security) (deflated 1%)
  adding: help/PureCN.rdx (332 bytes security) (stored 0%)
  adding: html/ (372 bytes security) (stored 0%)
  adding: html/00Index.html (332 bytes security) (deflated 75%)
  adding: html/R.css (332 bytes security) (deflated 75%)
  adding: INDEX (332 bytes security) (deflated 64%)
  adding: MD5 (332 bytes security) (deflated 50%)
  adding: Meta/ (372 bytes security) (stored 0%)
  adding: Meta/data.rds (332 bytes security) (stored 0%)
  adding: Meta/features.rds (332 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (332 bytes security) (stored 0%)
  adding: Meta/links.rds (332 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (332 bytes security) (stored 0%)
  adding: Meta/package.rds (332 bytes security) (stored 0%)
  adding: Meta/Rd.rds (332 bytes security) (stored 0%)
  adding: Meta/vignette.rds (332 bytes security) (stored 0%)
  adding: NAMESPACE (332 bytes security) (deflated 72%)
  adding: NEWS (332 bytes security) (deflated 51%)
  adding: R/ (372 bytes security) (stored 0%)
  adding: R/PureCN (332 bytes security) (deflated 41%)
  adding: R/PureCN.rdb (332 bytes security) (deflated 0%)
  adding: R/PureCN.rdx (332 bytes security) (stored 0%)
  adding: unitTests/ (372 bytes security) (stored 0%)
  adding: unitTests/test_annotateTargets.R (332 bytes security) (deflated 54%)
  adding: unitTests/test_bootstrapResults.R (332 bytes security) (deflated 66%)
  adding: unitTests/test_calculateBamCoverageByInterval.R (332 bytes security) (deflated 63%)
  adding: unitTests/test_calculateGCContentByInterval.R (332 bytes security) (deflated 78%)
  adding: unitTests/test_calculatePowerDetectSomatic.R (332 bytes security) (deflated 73%)
  adding: unitTests/test_callAlterations.R (332 bytes security) (deflated 54%)
  adding: unitTests/test_callAlterationsFromSegmentation.R (332 bytes security) (deflated 54%)
  adding: unitTests/test_callLOH.R (332 bytes security) (deflated 34%)
  adding: unitTests/test_callMutationBurden.R (332 bytes security) (deflated 70%)
  adding: unitTests/test_correctCoverageBias.R (332 bytes security) (deflated 69%)
  adding: unitTests/test_createCurationFile.R (332 bytes security) (deflated 80%)
  adding: unitTests/test_createNormalDatabase.R (332 bytes security) (deflated 74%)
  adding: unitTests/test_filterVcf.R (332 bytes security) (deflated 58%)
  adding: unitTests/test_findFocal.R (332 bytes security) (deflated 48%)
  adding: unitTests/test_getSexFromCoverage.R (332 bytes security) (deflated 71%)
  adding: unitTests/test_getSexFromVcf.R (332 bytes security) (deflated 37%)
  adding: unitTests/test_poolCoverage.R (332 bytes security) (deflated 65%)
  adding: unitTests/test_predictSomatic.R (332 bytes security) (deflated 59%)
  adding: unitTests/test_readCoverageFile.R (332 bytes security) (deflated 74%)
  adding: unitTests/test_runAbsoluteCN.R (332 bytes security) (deflated 81%)
  adding: unitTests/test_setMappingBiasVcf.R (332 bytes security) (deflated 63%)
  adding: unitTests/test_setPriorVcf.R (332 bytes security) (deflated 44%)