BioC 3.6: CHECK report for OPWeight on tokay1

Package: OPWeight

Version: 0.99.19

Command: rm -rf OPWeight.buildbin-libdir OPWeight.Rcheck && mkdir OPWeight.buildbin-libdir OPWeight.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=OPWeight.buildbin-libdir OPWeight_0.99.19.tar.gz >OPWeight.Rcheck\00install.out 2>&1 && cp OPWeight.Rcheck\00install.out OPWeight-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=OPWeight.buildbin-libdir --install="check:OPWeight-install.out" --force-multiarch --no-vignettes --timings OPWeight_0.99.19.tar.gz

StartedAt: 2017-08-16 01:19:59 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 01:21:37 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 98.5 seconds

RetCode: 0

Status:  OK

CheckDir: OPWeight.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf OPWeight.buildbin-libdir OPWeight.Rcheck && mkdir OPWeight.buildbin-libdir OPWeight.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=OPWeight.buildbin-libdir OPWeight_0.99.19.tar.gz >OPWeight.Rcheck\00install.out 2>&1 && cp OPWeight.Rcheck\00install.out OPWeight-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=OPWeight.buildbin-libdir --install="check:OPWeight-install.out" --force-multiarch --no-vignettes --timings OPWeight_0.99.19.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/OPWeight.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'OPWeight/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'OPWeight' version '0.99.19'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OPWeight' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
     user system elapsed
opw 25.98      0   25.99
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
     user system elapsed
opw 20.54   0.02   20.56
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'OPWeight' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'OPWeight' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OPWeight' as OPWeight_0.99.19.zip
* DONE (OPWeight)

name	user	system	elapsed
opw	25.98	0.00	25.99
prob_rank_givenEffect	0.77	0.00	0.76
prob_rank_givenEffect_approx	0.81	0.00	0.81
prob_rank_givenEffect_exact	0.83	0.00	0.83
prob_rank_givenEffect_simu	0.85	0.00	0.84
weight_binary	1.23	0.00	1.24
weight_by_delta	0.33	0.00	0.33
weight_continuous	1.17	0.00	1.17

name	user	system	elapsed
opw	20.54	0.02	20.56
prob_rank_givenEffect	0.74	0.00	0.73
prob_rank_givenEffect_approx	0.71	0.00	0.70
prob_rank_givenEffect_exact	0.76	0.00	0.77
prob_rank_givenEffect_simu	0.91	0.00	0.91
weight_binary	1.06	0.00	1.06
weight_by_delta	0.31	0.00	0.31
weight_continuous	1.05	0.00	1.05