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BioC 3.6: CHECK report for MBttest on tokay1

This page was generated on 2017-08-16 13:35:50 -0400 (Wed, 16 Aug 2017).

Package 777/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MBttest 1.5.0
Yuan-De Tan
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MBttest
Last Changed Rev: 129129 / Revision: 131943
Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MBttest
Version: 1.5.0
Command: rm -rf MBttest.buildbin-libdir MBttest.Rcheck && mkdir MBttest.buildbin-libdir MBttest.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MBttest.buildbin-libdir MBttest_1.5.0.tar.gz >MBttest.Rcheck\00install.out 2>&1 && cp MBttest.Rcheck\00install.out MBttest-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=MBttest.buildbin-libdir --install="check:MBttest-install.out" --force-multiarch --no-vignettes --timings MBttest_1.5.0.tar.gz
StartedAt: 2017-08-16 00:37:57 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 00:38:50 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 52.7 seconds
RetCode: 0
Status:  OK  
CheckDir: MBttest.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MBttest.buildbin-libdir MBttest.Rcheck && mkdir MBttest.buildbin-libdir MBttest.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MBttest.buildbin-libdir MBttest_1.5.0.tar.gz >MBttest.Rcheck\00install.out 2>&1 && cp MBttest.Rcheck\00install.out MBttest-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=MBttest.buildbin-libdir --install="check:MBttest-install.out" --force-multiarch --no-vignettes --timings MBttest_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/MBttest.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MBttest/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MBttest' version '1.5.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MBttest' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
myheatmap 5.45   0.07    6.36
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

MBttest.Rcheck/00install.out:


install for i386

* installing *source* package 'MBttest' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MBttest' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MBttest' as MBttest_1.5.0.zip
* DONE (MBttest)

MBttest.Rcheck/examples_i386/MBttest-Ex.timings:

nameusersystemelapsed
MBttest-package1.880.021.89
betaparametVP0.140.000.14
betaparametab000
betaparametw0.010.000.01
betattest0.430.000.43
dat0.070.000.07
jkttcell0.050.000.05
maplot0.410.030.44
mbetattest1.120.001.12
mtprocedure0.020.000.02
mtpvadjust000
myheatmap4.000.084.08
oddratio000
pratio000
simulat0.180.000.19
skjt0.070.000.06
smbetattest0.400.010.42

MBttest.Rcheck/examples_x64/MBttest-Ex.timings:

nameusersystemelapsed
MBttest-package2.280.032.41
betaparametVP0.110.000.11
betaparametab000
betaparametw000
betattest0.60.00.6
dat0.070.000.08
jkttcell0.070.000.06
maplot0.500.030.54
mbetattest1.450.001.46
mtprocedure0.020.000.01
mtpvadjust000
myheatmap5.450.076.36
oddratio000
pratio000
simulat0.360.000.36
skjt0.050.010.06
smbetattest0.720.020.73