Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H [I] J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.6: CHECK report for Icens on tokay1

This page was generated on 2017-08-16 13:26:24 -0400 (Wed, 16 Aug 2017).

Package 657/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Icens 1.49.0
Bioconductor Package Maintainer
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Icens
Last Changed Rev: 129129 / Revision: 131943
Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Icens
Version: 1.49.0
Command: rm -rf Icens.buildbin-libdir Icens.Rcheck && mkdir Icens.buildbin-libdir Icens.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Icens.buildbin-libdir Icens_1.49.0.tar.gz >Icens.Rcheck\00install.out 2>&1 && cp Icens.Rcheck\00install.out Icens-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=Icens.buildbin-libdir --install="check:Icens-install.out" --force-multiarch --no-vignettes --timings Icens_1.49.0.tar.gz
StartedAt: 2017-08-16 00:14:44 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 00:16:08 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 84.2 seconds
RetCode: 0
Status:  OK  
CheckDir: Icens.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Icens.buildbin-libdir Icens.Rcheck && mkdir Icens.buildbin-libdir Icens.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Icens.buildbin-libdir Icens_1.49.0.tar.gz >Icens.Rcheck\00install.out 2>&1 && cp Icens.Rcheck\00install.out Icens-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=Icens.buildbin-libdir --install="check:Icens-install.out" --force-multiarch --no-vignettes --timings Icens_1.49.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/Icens.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Icens/DESCRIPTION' ... OK
* this is package 'Icens' version '1.49.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Icens' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'survival'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
VEMICMmac: no visible binding for global variable 'EMstep'
Undefined global functions or variables:
  EMstep
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testbv.R'
  Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117
<  [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 4.639536e-17
---
>  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.480201e-16
Warning message:
running command '"diff" -bw "C:\Users\biocbuild\bbs-3.6-bioc\tmpdir\RtmpW88X18\Rdiffa137015c45540" "C:\Users\biocbuild\bbs-3.6-bioc\tmpdir\RtmpW88X18\Rdiffb137069ed53e4"' had status 1 
 OK
** running tests for arch 'x64' ...
  Running 'testbv.R'
  Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117
<  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.640501e-16
---
>  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.480201e-16
Warning message:
running command '"diff" -bw "C:\Users\biocbuild\bbs-3.6-bioc\tmpdir\RtmpSS1NRr\Rdiffa1b8024663ef" "C:\Users\biocbuild\bbs-3.6-bioc\tmpdir\RtmpSS1NRr\Rdiffb1b8028567890"' had status 1 
 OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/Icens.Rcheck/00check.log'
for details.


Icens.Rcheck/00install.out:


install for i386

* installing *source* package 'Icens' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'Icens' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Icens' as Icens_1.49.0.zip
* DONE (Icens)

Icens.Rcheck/examples_i386/Icens-Ex.timings:

nameusersystemelapsed
BVcliques0.100.020.11
BVclmat0.580.000.58
BVsupport0.590.000.59
EM0.080.030.11
EMICM0.300.010.31
ISDM3.480.023.50
MLEintvl0.020.000.02
Maclist0.010.000.01
Macmat0.020.000.02
PGM0.20.00.2
Plotboxes0.050.000.05
VEM0.110.000.11
cmv000
cosmesis0.000.020.02
hiv0.010.000.02
plot.icsurv0.330.000.32
pruitt000

Icens.Rcheck/examples_x64/Icens-Ex.timings:

nameusersystemelapsed
BVcliques0.130.000.12
BVclmat0.810.010.83
BVsupport0.870.000.87
EM0.070.020.08
EMICM0.20.00.2
ISDM4.090.054.15
MLEintvl0.030.000.03
Maclist0.020.000.01
Macmat0.020.000.02
PGM0.110.000.11
Plotboxes0.020.000.02
VEM0.070.000.08
cmv000
cosmesis000
hiv0.000.010.02
plot.icsurv0.280.000.28
pruitt0.020.000.01