Back to the "Multiple platform build/check report" A  B  C [D] E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.6: CHECK report for DASC on tokay1

This page was generated on 2017-08-16 13:38:01 -0400 (Wed, 16 Aug 2017).

Package 320/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DASC 0.99.11
Haidong Yi
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DASC
Last Changed Rev: 129446 / Revision: 131943
Last Changed Date: 2017-05-06 19:25:28 -0400 (Sat, 06 May 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: DASC
Version: 0.99.11
Command: rm -rf DASC.buildbin-libdir DASC.Rcheck && mkdir DASC.buildbin-libdir DASC.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DASC.buildbin-libdir DASC_0.99.11.tar.gz >DASC.Rcheck\00install.out 2>&1 && cp DASC.Rcheck\00install.out DASC-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=DASC.buildbin-libdir --install="check:DASC-install.out" --force-multiarch --no-vignettes --timings DASC_0.99.11.tar.gz
StartedAt: 2017-08-15 22:50:44 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 22:53:14 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 149.7 seconds
RetCode: 0
Status:  OK  
CheckDir: DASC.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf DASC.buildbin-libdir DASC.Rcheck && mkdir DASC.buildbin-libdir DASC.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DASC.buildbin-libdir DASC_0.99.11.tar.gz >DASC.Rcheck\00install.out 2>&1 && cp DASC.Rcheck\00install.out DASC-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=DASC.buildbin-libdir --install="check:DASC-install.out" --force-multiarch --no-vignettes --timings DASC_0.99.11.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/DASC.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DASC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DASC' version '0.99.11'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DASC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
     user system elapsed
DASC  1.2   0.13   13.62
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
     user system elapsed
DASC 1.65   0.14   17.02
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

DASC.Rcheck/00install.out:


install for i386

* installing *source* package 'DASC' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'DASC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DASC' as DASC_0.99.11.zip
* DONE (DASC)

DASC.Rcheck/examples_i386/DASC-Ex.timings:

nameusersystemelapsed
DASC 1.20 0.1313.62
Sptree0.020.000.02
adj2vector000
get_father000
trans_ADJ0.020.000.02
trans_Laplace0.000.010.01
update_G000

DASC.Rcheck/examples_x64/DASC-Ex.timings:

nameusersystemelapsed
DASC 1.65 0.1417.02
Sptree0.020.000.01
adj2vector000
get_father000
trans_ADJ0.030.000.04
trans_Laplace000
update_G000