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BioC 3.5: BUILD report for rcellminer on veracruz2

This page was generated on 2017-10-18 14:33:04 -0400 (Wed, 18 Oct 2017).

Package 1073/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rcellminer 1.8.0
Augustin Luna , Vinodh Rajapakse
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/rcellminer
Branch: RELEASE_3_5
Last Commit: 9b40020
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  ERROR  skipped  skipped 
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: rcellminer
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rcellminer
StartedAt: 2017-10-17 21:37:30 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 21:37:46 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 16.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rcellminer
###
##############################################################################
##############################################################################


* checking for file ‘rcellminer/DESCRIPTION’ ... OK
* preparing ‘rcellminer’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, lengths, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
    rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: rcdk
Loading required package: rcdklibs
Loading required package: rJava
Loading required package: fingerprint
Loading required package: rcellminerData
Quitting from lines 118-119 (rcellminerUsage.Rmd) 
Error: processing vignette 'rcellminerUsage.Rmd' failed with diagnostics:
unused argument (height)
Execution halted