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BioC 3.5: INSTALL report for rnaSeqMap on tokay2

This page was generated on 2017-08-16 13:20:46 -0400 (Wed, 16 Aug 2017).

Package 1132/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rnaSeqMap 2.34.0
Michal Okoniewski
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/rnaSeqMap
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: rnaSeqMap
Version: 2.34.0
Command: rm -rf rnaSeqMap.buildbin-libdir && mkdir rnaSeqMap.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/rnaSeqMap_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=rnaSeqMap.buildbin-libdir --merge-multiarch rnaSeqMap_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL rnaSeqMap_2.34.0.zip && rm rnaSeqMap_2.34.0.tar.gz rnaSeqMap_2.34.0.zip
StartedAt: 2017-08-15 18:31:10 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:32:09 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 58.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf rnaSeqMap.buildbin-libdir && mkdir rnaSeqMap.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/rnaSeqMap_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=rnaSeqMap.buildbin-libdir --merge-multiarch rnaSeqMap_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL rnaSeqMap_2.34.0.zip  && rm rnaSeqMap_2.34.0.tar.gz rnaSeqMap_2.34.0.zip
###
##############################################################################
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100  707k  100  707k    0     0  17.0M      0 --:--:-- --:--:-- --:--:-- 17.7M

install for i386

* installing *source* package 'rnaSeqMap' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c Rinit.c -o Rinit.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c gcoverage.c -o gcoverage.o
gcoverage.c: In function 'gcoverage':
gcoverage.c:7:31: warning: variable 'nc' set but not used [-Wunused-but-set-variable]
     int  start, i, j, na, nb, nc, nwyn;
                               ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ghistogram.c -o ghistogram.o
ghistogram.c: In function 'ghistogram':
ghistogram.c:9:10: warning: variable 'xa' set but not used [-Wunused-but-set-variable]
     int *xa, *xb, *xab;
          ^
ghistogram.c:8:20: warning: variable 'nb' set but not used [-Wunused-but-set-variable]
  int i, j, l , na, nb, nab, Is;
                    ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c regionmining.c -o regionmining.o
regionmining.c: In function 'regionmining':
regionmining.c:22:18: warning: variable 'start' set but not used [-Wunused-but-set-variable]
     int current, start, param, minsup,*xwyn; 
                  ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c splicingind.c -o splicingind.o
splicingind.c: In function 'splicingind':
splicingind.c:8:13: warning: variable 'nb' set but not used [-Wunused-but-set-variable]
  int j, na, nb, nab;
             ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o rnaSeqMap.dll tmp.def Rinit.o gcoverage.o ghistogram.o regionmining.o splicingind.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'rnaSeqMap' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c Rinit.c -o Rinit.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c gcoverage.c -o gcoverage.o
gcoverage.c: In function 'gcoverage':
gcoverage.c:7:31: warning: variable 'nc' set but not used [-Wunused-but-set-variable]
     int  start, i, j, na, nb, nc, nwyn;
                               ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ghistogram.c -o ghistogram.o
ghistogram.c: In function 'ghistogram':
ghistogram.c:9:10: warning: variable 'xa' set but not used [-Wunused-but-set-variable]
     int *xa, *xb, *xab;
          ^
ghistogram.c:8:20: warning: variable 'nb' set but not used [-Wunused-but-set-variable]
  int i, j, l , na, nb, nab, Is;
                    ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c regionmining.c -o regionmining.o
regionmining.c: In function 'regionmining':
regionmining.c:22:18: warning: variable 'start' set but not used [-Wunused-but-set-variable]
     int current, start, param, minsup,*xwyn; 
                  ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c splicingind.c -o splicingind.o
splicingind.c: In function 'splicingind':
splicingind.c:8:13: warning: variable 'nb' set but not used [-Wunused-but-set-variable]
  int j, na, nb, nab;
             ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o rnaSeqMap.dll tmp.def Rinit.o gcoverage.o ghistogram.o regionmining.o splicingind.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rnaSeqMap' as rnaSeqMap_2.34.0.zip
* DONE (rnaSeqMap)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'rnaSeqMap' successfully unpacked and MD5 sums checked