BioC 3.5: CHECK report for gtrellis on tokay2

Package: gtrellis

Version: 1.8.0

Command: rm -rf gtrellis.buildbin-libdir gtrellis.Rcheck && mkdir gtrellis.buildbin-libdir gtrellis.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=gtrellis.buildbin-libdir gtrellis_1.8.0.tar.gz >gtrellis.Rcheck\00install.out 2>&1 && cp gtrellis.Rcheck\00install.out gtrellis-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=gtrellis.buildbin-libdir --install="check:gtrellis-install.out" --force-multiarch --no-vignettes --timings gtrellis_1.8.0.tar.gz

StartedAt: 2017-08-16 00:23:14 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 00:26:08 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 174.8 seconds

RetCode: 0

Status:  OK

CheckDir: gtrellis.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf gtrellis.buildbin-libdir gtrellis.Rcheck && mkdir gtrellis.buildbin-libdir gtrellis.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=gtrellis.buildbin-libdir gtrellis_1.8.0.tar.gz >gtrellis.Rcheck\00install.out 2>&1 && cp gtrellis.Rcheck\00install.out gtrellis-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=gtrellis.buildbin-libdir --install="check:gtrellis-install.out" --force-multiarch --no-vignettes --timings gtrellis_1.8.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/gtrellis.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'gtrellis/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gtrellis' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gtrellis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test-all.R'
 OK
** running tests for arch 'x64' ...
  Running 'test-all.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'gtrellis' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'gtrellis' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gtrellis' as gtrellis_1.8.0.zip
* DONE (gtrellis)

name	user	system	elapsed
add_heatmap_track	3.67	0.05	4.30
add_ideogram_track	2.31	0.00	2.32
add_lines_track	1.90	0.00	1.91
add_points_track	1.67	0.03	1.71
add_rect_track	1.27	0.00	1.26
add_segments_track	1.17	0.00	1.18
add_track	1.78	0.01	1.79
current_track	0	0	0
get_cell_meta_data	2.34	0.00	2.35
gtrellis_layout	2.35	0.00	2.34
gtrellis_show_index	0.83	0.00	0.83

name	user	system	elapsed
add_heatmap_track	4.35	0.04	4.38
add_ideogram_track	2.69	0.00	2.69
add_lines_track	2.60	0.00	2.59
add_points_track	1.89	0.00	1.89
add_rect_track	2.11	0.00	2.44
add_segments_track	1.84	0.00	1.84
add_track	2.39	0.00	2.39
current_track	0	0	0
get_cell_meta_data	2.56	0.00	2.57
gtrellis_layout	3.46	0.00	3.45
gtrellis_show_index	1.09	0.00	1.09