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BioC 3.5: BUILD BIN report for VariantAnnotation on tokay2

This page was generated on 2017-08-16 13:21:12 -0400 (Wed, 16 Aug 2017).

Package 1356/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VariantAnnotation 1.22.3
Valerie Obenchain
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/VariantAnnotation
Last Changed Rev: 130629 / Revision: 131943
Last Changed Date: 2017-06-23 01:12:08 -0400 (Fri, 23 Jun 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: VariantAnnotation
Version: 1.22.3
Command: cd VariantAnnotation.buildbin-libdir/VariantAnnotation && zip -r ../../VariantAnnotation_1.22.3.zip . & cd ../..
StartedAt: 2017-08-16 04:56:07 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 04:56:40 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 33.5 seconds
RetCode: 0
Status:  OK  
PackageFile: VariantAnnotation_1.22.3.zip
PackageFileSize: 5.569 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd VariantAnnotation.buildbin-libdir/VariantAnnotation && zip -r ../../VariantAnnotation_1.22.3.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (264 bytes security) (deflated 57%)
  adding: DESCRIPTION (264 bytes security) (deflated 49%)
  adding: doc/ (304 bytes security) (stored 0%)
  adding: doc/filterVcf.pdf (264 bytes security) (deflated 10%)
  adding: doc/filterVcf.R (264 bytes security) (deflated 69%)
  adding: doc/filterVcf.Rnw (264 bytes security) (deflated 58%)
  adding: doc/index.html (264 bytes security) (deflated 68%)
  adding: doc/VariantAnnotation.pdf (264 bytes security) (deflated 15%)
  adding: doc/VariantAnnotation.R (264 bytes security) (deflated 77%)
  adding: doc/VariantAnnotation.Rnw (264 bytes security) (deflated 62%)
  adding: extdata/ (304 bytes security) (stored 0%)
  adding: extdata/chr22.vcf.gz (264 bytes security) (deflated 0%)
  adding: extdata/chr22.vcf.gz.tbi (264 bytes security) (deflated 3%)
  adding: extdata/chr7-sub.vcf.gz (264 bytes security) (deflated 0%)
  adding: extdata/chr7-sub.vcf.gz.tbi (264 bytes security) (deflated 5%)
  adding: extdata/ex2.vcf (264 bytes security) (deflated 53%)
  adding: extdata/gl_chr1.vcf (264 bytes security) (deflated 80%)
  adding: extdata/h1187-10k.vcf.gz (264 bytes security) (deflated 0%)
  adding: extdata/h1187-10k.vcf.gz.tbi (264 bytes security) (stored 0%)
  adding: extdata/hapmap_exome_chr22.vcf.gz (264 bytes security) (deflated 0%)
  adding: extdata/hapmap_exome_chr22.vcf.gz.tbi (264 bytes security) (deflated 4%)
  adding: extdata/structural.vcf (264 bytes security) (deflated 63%)
  adding: help/ (304 bytes security) (stored 0%)
  adding: help/aliases.rds (264 bytes security) (stored 0%)
  adding: help/AnIndex (264 bytes security) (deflated 86%)
  adding: help/paths.rds (264 bytes security) (stored 0%)
  adding: help/VariantAnnotation.rdb (264 bytes security) (deflated 1%)
  adding: help/VariantAnnotation.rdx (264 bytes security) (stored 0%)
  adding: html/ (304 bytes security) (stored 0%)
  adding: html/00Index.html (264 bytes security) (deflated 91%)
  adding: html/R.css (264 bytes security) (deflated 75%)
  adding: INDEX (264 bytes security) (deflated 65%)
  adding: libs/ (304 bytes security) (stored 0%)
  adding: libs/i386/ (304 bytes security) (stored 0%)
  adding: libs/i386/VariantAnnotation.dll (264 bytes security) (deflated 55%)
  adding: libs/x64/ (304 bytes security) (stored 0%)
  adding: libs/x64/VariantAnnotation.dll (264 bytes security) (deflated 53%)
  adding: MD5 (264 bytes security) (deflated 50%)
  adding: Meta/ (304 bytes security) (stored 0%)
  adding: Meta/features.rds (264 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (264 bytes security) (stored 0%)
  adding: Meta/links.rds (264 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (264 bytes security) (stored 0%)
  adding: Meta/package.rds (264 bytes security) (stored 0%)
  adding: Meta/Rd.rds (264 bytes security) (stored 0%)
  adding: Meta/vignette.rds (264 bytes security) (stored 0%)
  adding: NAMESPACE (264 bytes security) (deflated 63%)
  adding: NEWS (264 bytes security) (deflated 65%)
  adding: R/ (304 bytes security) (stored 0%)
  adding: R/VariantAnnotation (264 bytes security) (deflated 41%)
  adding: R/VariantAnnotation.rdb (264 bytes security) (deflated 20%)
  adding: R/VariantAnnotation.rdx (264 bytes security) (deflated 4%)
  adding: scripts/ (304 bytes security) (stored 0%)
  adding: scripts/test_Rplinkseq.R (264 bytes security) (deflated 68%)
  adding: unitTests/ (304 bytes security) (stored 0%)
  adding: unitTests/cases/ (304 bytes security) (stored 0%)
  adding: unitTests/cases/banded_gvcf.vcf (264 bytes security) (deflated 63%)
  adding: unitTests/cases/expand.vcf (264 bytes security) (deflated 68%)
  adding: unitTests/cases/fewer-FORMAT-than-GENO.vcf (264 bytes security) (deflated 45%)
  adding: unitTests/cases/FORMAT_header_no_SAMPLEs.vcf (264 bytes security) (deflated 47%)
  adding: unitTests/cases/missing-FORMAT-metadata-elt.vcf (264 bytes security) (deflated 42%)
  adding: unitTests/cases/mixedStructural.vcf (264 bytes security) (deflated 63%)
  adding: unitTests/cases/multiple_INFO_fields.vcf (264 bytes security) (deflated 30%)
  adding: unitTests/cases/negative_FORMAT_Number.vcf (264 bytes security) (deflated 64%)
  adding: unitTests/cases/no_FORMAT_column.vcf (264 bytes security) (deflated 31%)
  adding: unitTests/cases/no_GENO_row.vcf (264 bytes security) (deflated 43%)
  adding: unitTests/cases/no_INFO_header.vcf (264 bytes security) (deflated 36%)
  adding: unitTests/cases/unspecified_INFO_FORMAT_fields.vcf (264 bytes security) (deflated 51%)
  adding: unitTests/cases/VarScan_header.vcf (264 bytes security) (deflated 58%)
  adding: unitTests/test_expand-methods.R (264 bytes security) (deflated 70%)
  adding: unitTests/test_filterVcf.R (264 bytes security) (deflated 78%)
  adding: unitTests/test_genotypeToSnpMatrix.R (264 bytes security) (deflated 82%)
  adding: unitTests/test_isSNV.R (264 bytes security) (deflated 78%)
  adding: unitTests/test_locateVariants-methods.R (264 bytes security) (deflated 73%)
  adding: unitTests/test_predictCoding-methods.R (264 bytes security) (deflated 77%)
  adding: unitTests/test_readVcf-methods.R (264 bytes security) (deflated 75%)
  adding: unitTests/test_scanVcf.R (264 bytes security) (deflated 68%)
  adding: unitTests/test_ScanVcfParam-class.R (264 bytes security) (deflated 73%)
  adding: unitTests/test_SIFTandPolyPhen.R (264 bytes security) (deflated 66%)
  adding: unitTests/test_snpSummary.R (264 bytes security) (deflated 66%)
  adding: unitTests/test_summarizeVariants-methods.R (264 bytes security) (deflated 49%)
  adding: unitTests/test_VCF-class.R (264 bytes security) (deflated 78%)
  adding: unitTests/test_VRanges-class.R (264 bytes security) (deflated 76%)
  adding: unitTests/test_writeVcf-methods.R (264 bytes security) (deflated 79%)