Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M [N] O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: CHECK report for NADfinder on tokay2

This page was generated on 2017-08-16 13:26:50 -0400 (Wed, 16 Aug 2017).

Package 882/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NADfinder 1.0.1
Jianhong Ou
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/NADfinder
Last Changed Rev: 131549 / Revision: 131943
Last Changed Date: 2017-07-25 00:09:45 -0400 (Tue, 25 Jul 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: NADfinder
Version: 1.0.1
Command: rm -rf NADfinder.buildbin-libdir NADfinder.Rcheck && mkdir NADfinder.buildbin-libdir NADfinder.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=NADfinder.buildbin-libdir NADfinder_1.0.1.tar.gz >NADfinder.Rcheck\00install.out 2>&1 && cp NADfinder.Rcheck\00install.out NADfinder-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=NADfinder.buildbin-libdir --install="check:NADfinder-install.out" --force-multiarch --no-vignettes --timings NADfinder_1.0.1.tar.gz
StartedAt: 2017-08-16 01:33:07 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 01:42:13 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 546.6 seconds
RetCode: 0
Status:  OK  
CheckDir: NADfinder.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf NADfinder.buildbin-libdir NADfinder.Rcheck && mkdir NADfinder.buildbin-libdir NADfinder.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=NADfinder.buildbin-libdir NADfinder_1.0.1.tar.gz >NADfinder.Rcheck\00install.out 2>&1 && cp NADfinder.Rcheck\00install.out NADfinder-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=NADfinder.buildbin-libdir --install="check:NADfinder-install.out" --force-multiarch --no-vignettes --timings NADfinder_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/NADfinder.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'NADfinder/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'NADfinder' version '1.0.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'NADfinder' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
callPeaks            7.72   0.69    8.41
trimPeaks            7.08   0.20    7.28
cumulativePercentage 6.17   0.55    6.72
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
callPeaks            8.75   0.58    9.33
cumulativePercentage 8.61   0.60    9.20
trimPeaks            7.98   0.33    8.31
plotSig              7.00   0.39    7.39
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

NADfinder.Rcheck/00install.out:


install for i386

* installing *source* package 'NADfinder' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'NADfinder' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NADfinder' as NADfinder_1.0.1.zip
* DONE (NADfinder)

NADfinder.Rcheck/examples_i386/NADfinder-Ex.timings:

nameusersystemelapsed
backgroundCorrection0.020.000.02
butterFilter0.050.060.10
callPeaks7.720.698.41
cumulativePercentage6.170.556.72
exportSignals2.300.232.53
getCorrelations1.380.101.47
groupZscores0.030.000.03
log2ratio000
log2se0.150.000.15
peakdet000
plotSig4.480.174.65
smoothRatiosByChromosome1.550.171.72
tileCount0.120.000.13
trimPeaks7.080.207.28
zscoreOverBck000

NADfinder.Rcheck/examples_x64/NADfinder-Ex.timings:

nameusersystemelapsed
backgroundCorrection0.020.000.02
butterFilter0.060.030.09
callPeaks8.750.589.33
cumulativePercentage8.610.609.20
exportSignals2.420.313.38
getCorrelations0.810.120.93
groupZscores0.030.000.03
log2ratio000
log2se0.140.020.16
peakdet000
plotSig7.000.397.39
smoothRatiosByChromosome1.880.222.10
tileCount0.170.000.17
trimPeaks7.980.338.31
zscoreOverBck000