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BioC 3.5: CHECK report for MVCClass on tokay2

This page was generated on 2017-08-16 13:18:51 -0400 (Wed, 16 Aug 2017).

Package 875/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MVCClass 1.50.0
Elizabeth Whalen
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/MVCClass
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MVCClass
Version: 1.50.0
Command: rm -rf MVCClass.buildbin-libdir MVCClass.Rcheck && mkdir MVCClass.buildbin-libdir MVCClass.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MVCClass.buildbin-libdir MVCClass_1.50.0.tar.gz >MVCClass.Rcheck\00install.out 2>&1 && cp MVCClass.Rcheck\00install.out MVCClass-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=MVCClass.buildbin-libdir --install="check:MVCClass-install.out" --force-multiarch --no-vignettes --timings MVCClass_1.50.0.tar.gz
StartedAt: 2017-08-16 01:31:12 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 01:31:54 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 42.3 seconds
RetCode: 0
Status:  OK  
CheckDir: MVCClass.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MVCClass.buildbin-libdir MVCClass.Rcheck && mkdir MVCClass.buildbin-libdir MVCClass.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MVCClass.buildbin-libdir MVCClass_1.50.0.tar.gz >MVCClass.Rcheck\00install.out 2>&1 && cp MVCClass.Rcheck\00install.out MVCClass-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=MVCClass.buildbin-libdir --install="check:MVCClass-install.out" --force-multiarch --no-vignettes --timings MVCClass_1.50.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/MVCClass.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MVCClass/DESCRIPTION' ... OK
* this is package 'MVCClass' version '1.50.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MVCClass' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'methods' which was already attached by Depends.
  Please remove these calls from your code.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'MVCClass/R/zzz.R':
  .onLoad calls:
    require("methods")

Package startup functions should not change the search path.
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... NOTE
prepare_Rd: MVC-class.Rd:54-55: Dropping empty section \examples
prepare_Rd: dfModel-class.Rd:42-43: Dropping empty section \examples
prepare_Rd: gAddChildMessage-class.Rd:42-43: Dropping empty section \examples
prepare_Rd: gAddDataMessage-class.Rd:42-43: Dropping empty section \examples
prepare_Rd: gAddMessage-class.Rd:37-38: Dropping empty section \examples
prepare_Rd: gAddViewMessage-class.Rd:42-43: Dropping empty section \examples
prepare_Rd: gAskAncestorMessage-class.Rd:62-63: Dropping empty section \examples
prepare_Rd: gEventFun-class.Rd:49-50: Dropping empty section \examples
prepare_Rd: gMessage-class.Rd:32-33: Dropping empty section \examples
prepare_Rd: gModel-class.Rd:71-72: Dropping empty section \examples
prepare_Rd: gModifyMessage-class.Rd:52-53: Dropping empty section \examples
prepare_Rd: gSendChildMessage-class.Rd:58-59: Dropping empty section \examples
prepare_Rd: gSendParentMessage-class.Rd:49-50: Dropping empty section \examples
prepare_Rd: gUpdateDataMessage-class.Rd:51-52: Dropping empty section \examples
prepare_Rd: gUpdateMessage-class.Rd:37-38: Dropping empty section \examples
prepare_Rd: gUpdateViewMessage-class.Rd:43-44: Dropping empty section \examples
prepare_Rd: genView-class.Rd:62-63: Dropping empty section \examples
prepare_Rd: linkedModelMVC-class.Rd:59-60: Dropping empty section \examples
prepare_Rd: plotView-class.Rd:67-68: Dropping empty section \examples
prepare_Rd: qqPlotView-class.Rd:59-60: Dropping empty section \examples
prepare_Rd: sPlotView-class.Rd:69-70: Dropping empty section \examples
prepare_Rd: singleModelMVC-class.Rd:41-42: Dropping empty section \examples
prepare_Rd: spreadView-class.Rd:50-51: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/MVCClass.Rcheck/00check.log'
for details.


MVCClass.Rcheck/00install.out:


install for i386

* installing *source* package 'MVCClass' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MVCClass' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MVCClass' as MVCClass_1.50.0.zip
* DONE (MVCClass)