Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: CHECK report for MIGSA on tokay2

This page was generated on 2017-08-16 13:26:43 -0400 (Wed, 16 Aug 2017).

Package 817/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MIGSA 1.0.1
Juan C. Rodriguez
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/MIGSA
Last Changed Rev: 130633 / Revision: 131943
Last Changed Date: 2017-06-23 10:16:08 -0400 (Fri, 23 Jun 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MIGSA
Version: 1.0.1
Command: rm -rf MIGSA.buildbin-libdir MIGSA.Rcheck && mkdir MIGSA.buildbin-libdir MIGSA.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MIGSA.buildbin-libdir MIGSA_1.0.1.tar.gz >MIGSA.Rcheck\00install.out 2>&1 && cp MIGSA.Rcheck\00install.out MIGSA-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=MIGSA.buildbin-libdir --install="check:MIGSA-install.out" --force-multiarch --no-vignettes --timings MIGSA_1.0.1.tar.gz
StartedAt: 2017-08-16 01:14:33 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 01:22:14 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 460.7 seconds
RetCode: 0
Status:  OK  
CheckDir: MIGSA.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MIGSA.buildbin-libdir MIGSA.Rcheck && mkdir MIGSA.buildbin-libdir MIGSA.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MIGSA.buildbin-libdir MIGSA_1.0.1.tar.gz >MIGSA.Rcheck\00install.out 2>&1 && cp MIGSA.Rcheck\00install.out MIGSA-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=MIGSA.buildbin-libdir --install="check:MIGSA-install.out" --force-multiarch --no-vignettes --timings MIGSA_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/MIGSA.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MIGSA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MIGSA' version '1.0.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MIGSA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
Genesets-loadGo  5.62   0.31    5.94
Genesets-enrichr 4.64   0.16    6.04
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
Genesets-loadGo  9.70   0.35   10.04
Genesets-enrichr 6.75   0.25    7.44
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

MIGSA.Rcheck/00install.out:


install for i386

* installing *source* package 'MIGSA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MIGSA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MIGSA' as MIGSA_1.0.1.zip
* DONE (MIGSA)

MIGSA.Rcheck/examples_i386/MIGSA-Ex.timings:

nameusersystemelapsed
ExprData-class0.020.000.01
FitOptions-class0.010.000.02
GSEAparams-class000
Genesets-as.Genesets000
Genesets-enrichr4.640.166.04
Genesets-geneSetsFromFile000
Genesets-loadGo5.620.315.94
IGSAinput-class0.640.000.64
IGSAinput-getDEGenes0.050.000.05
IGSAinput-getterSetters0.010.000.01
MIGSA0.130.000.13
MIGSAmGSZ000
MIGSAres-GoAnalysis0.360.030.40
MIGSAres-common0.270.000.27
MIGSAres-genesManipulation0.670.030.68
MIGSAres-getAdditionalInfo0.040.000.05
MIGSAres-plots3.320.003.31
MIGSAres-setEnrCutoff0.040.000.05
SEAparams-class000
summaryFunctions0.520.000.52

MIGSA.Rcheck/examples_x64/MIGSA-Ex.timings:

nameusersystemelapsed
ExprData-class0.020.000.02
FitOptions-class0.010.000.02
GSEAparams-class0.010.000.02
Genesets-as.Genesets000
Genesets-enrichr6.750.257.44
Genesets-geneSetsFromFile0.020.000.02
Genesets-loadGo 9.70 0.3510.04
IGSAinput-class0.950.010.97
IGSAinput-getDEGenes0.060.000.06
IGSAinput-getterSetters0.020.000.02
MIGSA0.20.00.2
MIGSAmGSZ0.020.000.02
MIGSAres-GoAnalysis0.420.000.42
MIGSAres-common0.470.000.47
MIGSAres-genesManipulation0.910.000.91
MIGSAres-getAdditionalInfo0.030.000.03
MIGSAres-plots4.240.004.24
MIGSAres-setEnrCutoff0.040.000.04
SEAparams-class000
summaryFunctions0.750.020.77