Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K [L] M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: CHECK report for LOBSTAHS on tokay2

This page was generated on 2017-08-16 13:25:58 -0400 (Wed, 16 Aug 2017).

Package 721/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LOBSTAHS 1.2.1
James Collins
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/LOBSTAHS
Last Changed Rev: 130755 / Revision: 131943
Last Changed Date: 2017-06-28 17:44:16 -0400 (Wed, 28 Jun 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ WARNINGS ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: LOBSTAHS
Version: 1.2.1
Command: rm -rf LOBSTAHS.buildbin-libdir LOBSTAHS.Rcheck && mkdir LOBSTAHS.buildbin-libdir LOBSTAHS.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LOBSTAHS.buildbin-libdir LOBSTAHS_1.2.1.tar.gz >LOBSTAHS.Rcheck\00install.out 2>&1 && cp LOBSTAHS.Rcheck\00install.out LOBSTAHS-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=LOBSTAHS.buildbin-libdir --install="check:LOBSTAHS-install.out" --force-multiarch --no-vignettes --timings LOBSTAHS_1.2.1.tar.gz
StartedAt: 2017-08-16 00:51:03 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 00:56:14 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 310.9 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: LOBSTAHS.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf LOBSTAHS.buildbin-libdir LOBSTAHS.Rcheck && mkdir LOBSTAHS.buildbin-libdir LOBSTAHS.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LOBSTAHS.buildbin-libdir LOBSTAHS_1.2.1.tar.gz >LOBSTAHS.Rcheck\00install.out 2>&1 && cp LOBSTAHS.Rcheck\00install.out LOBSTAHS-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=LOBSTAHS.buildbin-libdir --install="check:LOBSTAHS-install.out" --force-multiarch --no-vignettes --timings LOBSTAHS_1.2.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/LOBSTAHS.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LOBSTAHS/DESCRIPTION' ... OK
* this is package 'LOBSTAHS' version '1.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'LOBSTAHS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                         old_size new_size compress
  default.LOBdbase.RData    1.5Mb    485Kb       xz
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
              user system elapsed
loadLOBdbase 10.43   0.07   10.49
doLOBscreen   4.26   0.10    6.21
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
loadLOBdbase 8.55   0.12    8.67
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/LOBSTAHS.Rcheck/00check.log'
for details.


LOBSTAHS.Rcheck/00install.out:


install for i386

* installing *source* package 'LOBSTAHS' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'LOBSTAHS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LOBSTAHS' as LOBSTAHS_1.2.1.zip
* DONE (LOBSTAHS)

LOBSTAHS.Rcheck/examples_i386/LOBSTAHS-Ex.timings:

nameusersystemelapsed
LOBSet-class000
LOBSet000
LOBdbase-class000
LOBdbase000
doLOBscreen4.260.106.21
exportDBtoCSV1.820.081.89
extractLOBdbasedata0.260.010.28
generateLOBdbase000
getLOBpeaklist0.030.000.03
loadLOBdbase10.43 0.0710.49

LOBSTAHS.Rcheck/examples_x64/LOBSTAHS-Ex.timings:

nameusersystemelapsed
LOBSet-class000
LOBSet000
LOBdbase-class000
LOBdbase000
doLOBscreen3.080.063.14
exportDBtoCSV2.060.023.53
extractLOBdbasedata0.310.030.34
generateLOBdbase000
getLOBpeaklist0.030.000.03
loadLOBdbase8.550.128.67