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BioC 3.5: BUILD report for KEGGprofile on veracruz2

This page was generated on 2017-08-16 13:30:21 -0400 (Wed, 16 Aug 2017).

Package 704/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGprofile 1.18.0
Shilin Zhao
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/KEGGprofile
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: KEGGprofile
Version: 1.18.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data KEGGprofile
StartedAt: 2017-08-15 20:00:52 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 20:01:24 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 32.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data KEGGprofile
###
##############################################################################
##############################################################################


* checking for file ‘KEGGprofile/DESCRIPTION’ ... OK
* preparing ‘KEGGprofile’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR

KEGG.db contains mappings based on older data because the original
  resource was removed from the the public domain before the most
  recent update was produced. This package should now be considered
  deprecated and future versions of Bioconductor may not have it
  available.  Users who want more current data are encouraged to look
  at the KEGGREST or reactome.db packages

trying URL 'http://www.genome.jp/kegg-bin/download?entry=hsa04110&format=kgml'
downloaded 1 bytes

trying URL 'http://www.genome.jp/kegg/pathway/hsa/hsa04110.png'
Content type 'image/png' length 32599 bytes (31 KB)
==================================================
downloaded 31 KB

trying URL 'http://www.genome.jp/kegg/pathway/map/map04110.png'
Content type 'image/png' length 30938 bytes (30 KB)
==================================================
downloaded 30 KB

trying URL 'http://www.genome.jp/kegg-bin/download?entry=hsa04110&format=kgml'
downloaded 1 bytes

trying URL 'http://www.genome.jp/kegg/pathway/hsa/hsa04110.png'
Content type 'image/png' length 32599 bytes (31 KB)
==================================================
downloaded 31 KB

trying URL 'http://www.genome.jp/kegg/pathway/map/map04110.png'
Content type 'image/png' length 30938 bytes (30 KB)
==================================================
downloaded 30 KB


Error: processing vignette 'KEGGprofile.Rnw' failed with diagnostics:
 chunk 6 (label = Visualization-bg) 
Error : 1: Start tag expected, '<' not found

Execution halted