Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H [I] J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: CHECK report for IntEREst on veracruz2

This page was generated on 2017-08-16 13:35:33 -0400 (Wed, 16 Aug 2017).

Package 678/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IntEREst 1.0.0
Ali Oghabian , Mikko Frilander
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/IntEREst
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: IntEREst
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings IntEREst_1.0.0.tar.gz
StartedAt: 2017-08-16 04:21:37 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 04:25:25 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 227.8 seconds
RetCode: 0
Status:  OK 
CheckDir: IntEREst.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings IntEREst_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/IntEREst.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IntEREst/DESCRIPTION’ ... OK
* this is package ‘IntEREst’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IntEREst’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

IntEREst.Rcheck/00install.out:

* installing *source* package ‘IntEREst’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IntEREst)

IntEREst.Rcheck/IntEREst-Ex.timings:

nameusersystemelapsed
addAnnotation0.1860.0020.192
annotateU123.1840.0583.361
attributes0.0390.0010.042
boxplot-method0.2810.0050.290
buildSsTypePwms0.0010.0000.001
counts-method0.0400.0010.042
eBayesInterest0.1290.0030.144
exactTestInterest0.7940.0040.816
getRepeatTable0.0010.0000.001
glmInterest0.2870.0030.299
interest3.2720.0453.405
interest.sequential1.9780.0132.045
interestResult0.0190.0010.019
intexIndex0.0020.0000.003
lfc0.5080.0020.531
mergeInterestResult0.0310.0010.033
plot-method0.2900.0030.297
qlfInterest0.2930.0070.303
readInterestResults0.0340.0020.038
referencePrepare1.9700.0062.036
subInterestResult0.0570.0010.058
treatInterest0.1060.0030.117
u12Boxplot0.0560.0010.057
u12BoxplotNb0.0830.0000.089
u12DensityPlot0.3020.0030.307
u12Index0.0040.0000.004
u12NbIndex0.0520.0000.053
updateRowDataCol0.0280.0000.028