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BioC 3.5: CHECK report for IWTomics on tokay2

This page was generated on 2017-08-16 13:26:28 -0400 (Wed, 16 Aug 2017).

Package 695/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IWTomics 1.0.0
Marzia A Cremona
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/IWTomics
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: IWTomics
Version: 1.0.0
Command: rm -rf IWTomics.buildbin-libdir IWTomics.Rcheck && mkdir IWTomics.buildbin-libdir IWTomics.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=IWTomics.buildbin-libdir IWTomics_1.0.0.tar.gz >IWTomics.Rcheck\00install.out 2>&1 && cp IWTomics.Rcheck\00install.out IWTomics-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=IWTomics.buildbin-libdir --install="check:IWTomics-install.out" --force-multiarch --no-vignettes --timings IWTomics_1.0.0.tar.gz
StartedAt: 2017-08-16 00:45:43 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 00:51:37 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 353.8 seconds
RetCode: 0
Status:  OK  
CheckDir: IWTomics.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf IWTomics.buildbin-libdir IWTomics.Rcheck && mkdir IWTomics.buildbin-libdir IWTomics.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=IWTomics.buildbin-libdir IWTomics_1.0.0.tar.gz >IWTomics.Rcheck\00install.out 2>&1 && cp IWTomics.Rcheck\00install.out IWTomics-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=IWTomics.buildbin-libdir --install="check:IWTomics-install.out" --force-multiarch --no-vignettes --timings IWTomics_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/IWTomics.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IWTomics/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IWTomics' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IWTomics' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
IWTomicsTest       48.31   0.35   48.71
IWTomics-package   13.61   1.25   14.86
IWTomicsData-class  7.69   0.02    7.71
plotSummary         6.72   0.19    6.92
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
IWTomicsTest       54.09   1.00   55.14
IWTomics-package   13.79   0.75   14.53
IWTomicsData-class 10.24   0.01   10.26
plotSummary         7.34   0.02    7.36
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

IWTomics.Rcheck/00install.out:


install for i386

* installing *source* package 'IWTomics' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'smooth' in package 'IWTomics'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'IWTomics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IWTomics' as IWTomics_1.0.0.zip
* DONE (IWTomics)

IWTomics.Rcheck/examples_i386/IWTomics-Ex.timings:

nameusersystemelapsed
ETn_example0.360.030.39
IWTomics-package13.61 1.2514.86
IWTomicsData-class7.690.027.71
IWTomicsTest48.31 0.3548.71
features_example000
plot-IWTomicsData0.470.020.49
plotSummary6.720.196.92
plotTest4.470.254.73
regionsFeatures_center0.020.000.02
regionsFeatures_scale000
regions_example000
smooth-IWTomicsData1.260.031.30

IWTomics.Rcheck/examples_x64/IWTomics-Ex.timings:

nameusersystemelapsed
ETn_example0.40.00.4
IWTomics-package13.79 0.7514.53
IWTomicsData-class10.24 0.0110.26
IWTomicsTest54.09 1.0055.14
features_example000
plot-IWTomicsData0.480.000.48
plotSummary7.340.027.36
plotTest4.220.004.22
regionsFeatures_center000
regionsFeatures_scale0.000.010.02
regions_example000
smooth-IWTomicsData1.940.022.00