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BioC 3.5: CHECK report for HilbertCurve on malbec2

This page was generated on 2017-08-16 13:16:51 -0400 (Wed, 16 Aug 2017).

Package 628/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 1.6.0
Zuguang Gu
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/HilbertCurve
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: HilbertCurve
Version: 1.6.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings HilbertCurve_1.6.0.tar.gz
StartedAt: 2017-08-15 23:49:07 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 23:51:05 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 118.6 seconds
RetCode: 0
Status:  OK 
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings HilbertCurve_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/HilbertCurve.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.0Mb
  sub-directories of 1Mb or more:
    doc   7.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        11.988  0.088  12.082
hc_layer-GenomicHilbertCurve-method  8.620  0.076   8.701
GenomicHilbertCurve                  7.664  0.032   7.963
HilbertCurve                         2.284  0.004   5.337
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-bioc/meat/HilbertCurve.Rcheck/00check.log’
for details.


HilbertCurve.Rcheck/00install.out:

* installing *source* package ‘HilbertCurve’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HilbertCurve)

HilbertCurve.Rcheck/HilbertCurve-Ex.timings:

nameusersystemelapsed
GenomicHilbertCurve-class000
GenomicHilbertCurve7.6640.0327.963
HilbertCurve-class000
HilbertCurve2.2840.0045.337
default_overlay000
hc_centered_text-HilbertCurve-method0.1040.0000.102
hc_layer-GenomicHilbertCurve-method8.6200.0768.701
hc_layer-HilbertCurve-method11.988 0.08812.082
hc_layer-dispatch000
hc_level-HilbertCurve-method0.0280.0000.027
hc_map-GenomicHilbertCurve-method2.7880.0202.811
hc_normal_points-HilbertCurve-method000
hc_offset-HilbertCurve-method0.0200.0000.018
hc_png-HilbertCurve-method4.0280.0284.058
hc_points-GenomicHilbertCurve-method0.2480.0000.246
hc_points-HilbertCurve-method0.5840.0080.593
hc_points-dispatch000
hc_polygon-GenomicHilbertCurve-method0.4640.0000.463
hc_polygon-HilbertCurve-method0.0600.0000.059
hc_polygon-dispatch0.0040.0000.000
hc_rect-GenomicHilbertCurve-method0.2440.0000.246
hc_rect-HilbertCurve-method0.0280.0000.028
hc_rect-dispatch000
hc_segmented_points-HilbertCurve-method000
hc_segments-GenomicHilbertCurve-method0.6560.0040.659
hc_segments-HilbertCurve-method0.0800.0000.077
hc_segments-dispatch000
hc_text-GenomicHilbertCurve-method0.1000.0000.099
hc_text-HilbertCurve-method0.0680.0000.066
hc_text-dispatch0.0000.0000.001
show-HilbertCurve-method0.0080.0000.008
unzoom-HilbertCurve-method0.0080.0000.007
zoom-HilbertCurve-method0.0080.0000.007