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BioC 3.5: INSTALL report for GeneSelectMMD on tokay2

This page was generated on 2017-08-16 13:20:12 -0400 (Wed, 16 Aug 2017).

Package 523/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneSelectMMD 2.20.1
Weiliang Qiu
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/GeneSelectMMD
Last Changed Rev: 129423 / Revision: 131943
Last Changed Date: 2017-05-05 15:32:27 -0400 (Fri, 05 May 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GeneSelectMMD
Version: 2.20.1
Command: rm -rf GeneSelectMMD.buildbin-libdir && mkdir GeneSelectMMD.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/GeneSelectMMD_2.20.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneSelectMMD.buildbin-libdir --merge-multiarch GeneSelectMMD_2.20.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL GeneSelectMMD_2.20.1.zip && rm GeneSelectMMD_2.20.1.tar.gz GeneSelectMMD_2.20.1.zip
StartedAt: 2017-08-15 18:14:30 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:15:09 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 39.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf GeneSelectMMD.buildbin-libdir && mkdir GeneSelectMMD.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/GeneSelectMMD_2.20.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneSelectMMD.buildbin-libdir --merge-multiarch GeneSelectMMD_2.20.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL GeneSelectMMD_2.20.1.zip  && rm GeneSelectMMD_2.20.1.tar.gz GeneSelectMMD_2.20.1.zip
###
##############################################################################
##############################################################################


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100 78077  100 78077    0     0   842k      0 --:--:-- --:--:-- --:--:--  856k

install for i386

* installing *source* package 'GeneSelectMMD' ...
** libs
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c Qfunc.f -o Qfunc.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c blas.f -o blas.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c isnan.c -o isnan.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c lbfgsb.f -o lbfgsb.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c lbfgsbDriver.f -o lbfgsbDriver.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c linpack.f -o linpack.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c llkhFun.f -o llkhFun.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c myTtest.f -o myTtest.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c paraEstLoop.f -o paraEstLoop.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c pt.c -o pt.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c timer.f -o timer.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c wiFun.f -o wiFun.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o GeneSelectMMD.dll tmp.def Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -LC:/local323/lib/i386 -LC:/local323/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'GeneSelectMMD' ...
** libs
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c Qfunc.f -o Qfunc.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c blas.f -o blas.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c isnan.c -o isnan.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c lbfgsb.f -o lbfgsb.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c lbfgsbDriver.f -o lbfgsbDriver.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c linpack.f -o linpack.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c llkhFun.f -o llkhFun.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c myTtest.f -o myTtest.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c paraEstLoop.f -o paraEstLoop.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c pt.c -o pt.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c timer.f -o timer.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c wiFun.f -o wiFun.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o GeneSelectMMD.dll tmp.def Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -LC:/local323/lib/x64 -LC:/local323/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneSelectMMD' as GeneSelectMMD_2.20.1.zip
* DONE (GeneSelectMMD)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'GeneSelectMMD' successfully unpacked and MD5 sums checked