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BioC 3.5: INSTALL report for GSVA on tokay2

This page was generated on 2017-08-16 13:21:02 -0400 (Wed, 16 Aug 2017).

Package 605/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSVA 1.24.1
Justin Guinney
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/GSVA
Last Changed Rev: 129457 / Revision: 131943
Last Changed Date: 2017-05-08 08:17:29 -0400 (Mon, 08 May 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GSVA
Version: 1.24.1
Command: rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/GSVA_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=GSVA.buildbin-libdir --merge-multiarch GSVA_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL GSVA_1.24.1.zip && rm GSVA_1.24.1.tar.gz GSVA_1.24.1.zip
StartedAt: 2017-08-15 18:24:06 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:24:44 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 37.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/GSVA_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=GSVA.buildbin-libdir --merge-multiarch GSVA_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL GSVA_1.24.1.zip  && rm GSVA_1.24.1.tar.gz GSVA_1.24.1.zip
###
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##############################################################################


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100  817k  100  817k    0     0  36.3M      0 --:--:-- --:--:-- --:--:-- 38.0M

install for i386

* installing *source* package 'GSVA' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c kernel_estimation.c -o kernel_estimation.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ks_test.c -o ks_test.o
ks_test.c: In function 'ks_sample':
ks_test.c:22:9: warning: unused variable 'mx_value' [-Wunused-variable]
  double mx_value = 0.0;
         ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c register_cmethods.c -o register_cmethods.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o GSVA.dll tmp.def kernel_estimation.o ks_test.o register_cmethods.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/GSVA.buildbin-libdir/GSVA/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'GSVA' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c kernel_estimation.c -o kernel_estimation.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ks_test.c -o ks_test.o
ks_test.c: In function 'ks_sample':
ks_test.c:22:9: warning: unused variable 'mx_value' [-Wunused-variable]
  double mx_value = 0.0;
         ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c register_cmethods.c -o register_cmethods.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o GSVA.dll tmp.def kernel_estimation.o ks_test.o register_cmethods.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/GSVA.buildbin-libdir/GSVA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSVA' as GSVA_1.24.1.zip
* DONE (GSVA)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'GSVA' successfully unpacked and MD5 sums checked