ELBOW 1.12.0
Graham Alvare , Xiangli Zhang
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/ELBOW | | Last Changed Rev: 129126 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | [ ERROR ] | skipped | skipped | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | ERROR | skipped | skipped | |
##############################################################################
##############################################################################
###
### Running command:
###
### chmod a+r ELBOW -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ELBOW
###
##############################################################################
##############################################################################
* checking for file 'ELBOW/DESCRIPTION' ... OK
* preparing 'ELBOW':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.5-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
https://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20986/suppl/
OK
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20986/suppl//mailto:%5bno%20address%20given%5d'
Warning in download.file(file.path(url, i), destfile = file.path(storedir, :
cannot open URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20986/suppl//mailto:%5bno%20address%20given%5d': HTTP status was '404 Not Found'
Error: processing vignette 'Elbow_tutorial_vignette.Rnw' failed with diagnostics:
chunk 2 (label = load_limmma)
Error in download.file(file.path(url, i), destfile = file.path(storedir, :
cannot open URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20986/suppl//mailto:%5bno%20address%20given%5d'
Execution halted