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BioC 3.5: INSTALL report for DNAcopy on tokay2

This page was generated on 2017-08-16 13:18:45 -0400 (Wed, 16 Aug 2017).

Package 360/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DNAcopy 1.50.1
Venkatraman E. Seshan
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/DNAcopy
Last Changed Rev: 129423 / Revision: 131943
Last Changed Date: 2017-05-05 15:32:27 -0400 (Fri, 05 May 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DNAcopy
Version: 1.50.1
Command: rm -rf DNAcopy.buildbin-libdir && mkdir DNAcopy.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/DNAcopy_1.50.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=DNAcopy.buildbin-libdir --merge-multiarch DNAcopy_1.50.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL DNAcopy_1.50.1.zip && rm DNAcopy_1.50.1.tar.gz DNAcopy_1.50.1.zip
StartedAt: 2017-08-15 18:08:07 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:08:47 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 40.2 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf DNAcopy.buildbin-libdir && mkdir DNAcopy.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/DNAcopy_1.50.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=DNAcopy.buildbin-libdir --merge-multiarch DNAcopy_1.50.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL DNAcopy_1.50.1.zip  && rm DNAcopy_1.50.1.tar.gz DNAcopy_1.50.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  115k  100  115k    0     0   376k      0 --:--:-- --:--:-- --:--:--  382k

install for i386

* installing *source* package 'DNAcopy' ...
** libs
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c cbsWtstats.f -o cbsWtstats.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c cbststats.f -o cbststats.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c changepoints-wtd.f -o changepoints-wtd.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c changepoints.f -o changepoints.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c esegment.f -o esegment.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c flchoose.c -o flchoose.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c fphyper.c -o fphyper.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c fpnorm.c -o fpnorm.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c getbdry.f -o getbdry.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c prune.f -o prune.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rshared.c -o rshared.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c segmentp.f -o segmentp.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c smoothCNA.f -o smoothCNA.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=core2 -c tailprobs.f -o tailprobs.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -LC:/local323/lib/i386 -LC:/local323/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/DNAcopy.buildbin-libdir/DNAcopy/libs/i386
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'DNAcopy' ...
** libs
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c cbsWtstats.f -o cbsWtstats.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c cbststats.f -o cbststats.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c changepoints-wtd.f -o changepoints-wtd.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c changepoints.f -o changepoints.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c esegment.f -o esegment.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c flchoose.c -o flchoose.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c fphyper.c -o fphyper.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c fpnorm.c -o fpnorm.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c getbdry.f -o getbdry.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c prune.f -o prune.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rshared.c -o rshared.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c segmentp.f -o segmentp.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c smoothCNA.f -o smoothCNA.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=core2 -c tailprobs.f -o tailprobs.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -LC:/local323/lib/x64 -LC:/local323/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/DNAcopy.buildbin-libdir/DNAcopy/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DNAcopy' as DNAcopy_1.50.1.zip
* DONE (DNAcopy)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'DNAcopy' successfully unpacked and MD5 sums checked