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BioC experimental data: CHECK report for geneLenDataBase on malbec1

This page was generated on 2017-04-15 16:49:30 -0400 (Sat, 15 Apr 2017).

Package 116/310HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.10.0
Nadia Davidson , Anthony Hawkins
Snapshot Date: 2017-04-15 09:20:05 -0400 (Sat, 15 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_4/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3958 / Revision: 4141
Last Changed Date: 2016-10-17 14:47:53 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: geneLenDataBase
Version: 1.10.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.10.0.tar.gz
StartedAt: 2017-04-15 10:56:12 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 11:01:05 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 292.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

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##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0960.0080.105
anoCar1.genscan.LENGTH0.0400.0320.070
anoCar1.xenoRefGene.LENGTH0.9760.0000.976
anoGam1.ensGene.LENGTH0.0840.0120.095
anoGam1.geneid.LENGTH0.0880.0120.101
anoGam1.genscan.LENGTH0.0520.0080.059
apiMel1.genscan.LENGTH0.0440.0080.050
apiMel2.ensGene.LENGTH0.1920.0000.191
apiMel2.geneid.LENGTH0.0400.0320.071
apiMel2.genscan.LENGTH0.0400.0040.046
aplCal1.xenoRefGene.LENGTH0.5560.0000.558
bosTau2.geneSymbol.LENGTH0.0560.0080.065
bosTau2.geneid.LENGTH0.4320.0080.440
bosTau2.genscan.LENGTH0.4920.0120.504
bosTau2.refGene.LENGTH0.0440.0120.056
bosTau2.sgpGene.LENGTH0.1080.0000.106
bosTau3.ensGene.LENGTH0.1200.0120.131
bosTau3.geneSymbol.LENGTH0.0440.0080.054
bosTau3.geneid.LENGTH0.1160.0040.122
bosTau3.genscan.LENGTH0.0680.0120.083
bosTau3.refGene.LENGTH0.0440.0200.062
bosTau3.sgpGene.LENGTH0.1160.0000.116
bosTau4.ensGene.LENGTH0.1320.0160.150
bosTau4.geneSymbol.LENGTH0.0400.0120.051
bosTau4.genscan.LENGTH0.0640.0160.078
bosTau4.nscanGene.LENGTH0.0360.0080.045
bosTau4.refGene.LENGTH0.0400.0120.052
braFlo1.xenoRefGene.LENGTH0.6040.0120.618
caeJap1.xenoRefGene.LENGTH0.3720.0000.375
caePb1.xenoRefGene.LENGTH0.5320.0080.537
caePb2.xenoRefGene.LENGTH0.5600.0040.564
caeRem2.xenoRefGene.LENGTH0.4560.0000.456
caeRem3.xenoRefGene.LENGTH0.5600.0000.561
calJac1.genscan.LENGTH0.1000.0160.115
calJac1.nscanGene.LENGTH0.1080.0000.106
calJac1.xenoRefGene.LENGTH0.9760.0000.975
canFam1.ensGene.LENGTH0.1360.0000.135
canFam1.geneSymbol.LENGTH0.0080.0000.008
canFam1.genscan.LENGTH0.5160.0040.518
canFam1.nscanGene.LENGTH0.0560.0000.056
canFam1.refGene.LENGTH0.0080.0000.007
canFam1.xenoRefGene.LENGTH0.6560.0000.658
canFam2.ensGene.LENGTH0.1120.0040.117
canFam2.geneSymbol.LENGTH0.0080.0000.008
canFam2.genscan.LENGTH0.0640.0000.063
canFam2.nscanGene.LENGTH0.0680.0040.072
canFam2.refGene.LENGTH0.0080.0000.008
canFam2.xenoRefGene.LENGTH0.6640.0000.662
cavPor3.ensGene.LENGTH0.1840.0040.187
cavPor3.genscan.LENGTH0.1000.0040.104
cavPor3.nscanGene.LENGTH0.0680.0040.073
cavPor3.xenoRefGene.LENGTH0.7000.0040.701
cb1.xenoRefGene.LENGTH0.5240.0000.526
cb3.xenoRefGene.LENGTH0.3800.0000.381
ce2.geneSymbol.LENGTH0.0960.0120.110
ce2.geneid.LENGTH0.0680.0000.065
ce2.refGene.LENGTH0.0960.0080.104
ce4.geneSymbol.LENGTH0.0920.0160.109
ce4.refGene.LENGTH0.0840.0200.103
ce4.xenoRefGene.LENGTH0.2120.0040.214
ce6.ensGene.LENGTH0.1040.0040.110
ce6.geneSymbol.LENGTH0.0920.0120.104
ce6.refGene.LENGTH0.0760.0280.104
ce6.xenoRefGene.LENGTH0.0840.0000.084
ci1.geneSymbol.LENGTH0.0080.0000.007
ci1.refGene.LENGTH0.0080.0000.007
ci1.xenoRefGene.LENGTH0.1960.0000.196
ci2.ensGene.LENGTH0.0680.0040.073
ci2.geneSymbol.LENGTH0.0080.0000.007
ci2.refGene.LENGTH0.0040.0040.006
ci2.xenoRefGene.LENGTH0.3120.0000.311
danRer3.ensGene.LENGTH0.1360.0160.150
danRer3.geneSymbol.LENGTH0.1280.0080.135
danRer3.refGene.LENGTH0.0520.0280.083
danRer4.ensGene.LENGTH0.1440.0000.145
danRer4.geneSymbol.LENGTH0.0640.0160.081
danRer4.genscan.LENGTH0.0640.0040.066
danRer4.nscanGene.LENGTH0.1080.0040.114
danRer4.refGene.LENGTH0.0560.0240.081
danRer5.ensGene.LENGTH0.1600.0000.158
danRer5.geneSymbol.LENGTH0.0680.0120.080
danRer5.refGene.LENGTH0.0520.0240.075
danRer5.vegaGene.LENGTH0.0520.0240.079
danRer5.vegaPseudoGene.LENGTH0.0000.0000.003
danRer6.ensGene.LENGTH0.2480.0200.271
danRer6.geneSymbol.LENGTH0.0880.0200.111
danRer6.refGene.LENGTH0.0760.0280.101
danRer6.xenoRefGene.LENGTH0.7360.0000.738
dm1.geneSymbol.LENGTH0.0800.0200.098
dm1.genscan.LENGTH0.1160.0200.137
dm1.refGene.LENGTH0.5720.0240.598
dm2.geneSymbol.LENGTH0.0880.0120.100
dm2.geneid.LENGTH0.0440.0120.055
dm2.genscan.LENGTH0.0240.0120.035
dm2.nscanGene.LENGTH0.0480.0000.048
dm2.refGene.LENGTH0.0560.0360.093
dm3.geneSymbol.LENGTH0.0680.0000.070
dm3.nscanPasaGene.LENGTH0.0640.0160.081
dm3.refGene.LENGTH0.0640.0000.067
dp2.genscan.LENGTH0.0360.0080.045
dp2.xenoRefGene.LENGTH0.2000.0040.204
dp3.geneid.LENGTH0.0280.0320.061
dp3.genscan.LENGTH0.0320.0080.037
dp3.xenoRefGene.LENGTH0.1200.0080.130
droAna1.geneid.LENGTH0.0640.0040.069
droAna1.genscan.LENGTH0.0240.0000.024
droAna1.xenoRefGene.LENGTH0.2120.0040.214
droAna2.genscan.LENGTH0.0480.0000.048
droAna2.xenoRefGene.LENGTH0.3120.0040.317
droEre1.genscan.LENGTH0.0280.0160.042
droEre1.xenoRefGene.LENGTH0.2720.0040.278
droGri1.genscan.LENGTH0.1240.0120.134
droGri1.xenoRefGene.LENGTH0.3000.0000.298
droMoj1.geneid.LENGTH0.1160.0120.130
droMoj1.genscan.LENGTH0.0520.0000.054
droMoj1.xenoRefGene.LENGTH0.2400.0080.249
droMoj2.genscan.LENGTH0.0440.0080.053
droMoj2.xenoRefGene.LENGTH0.2960.0040.303
droPer1.genscan.LENGTH0.0440.0120.057
droPer1.xenoRefGene.LENGTH0.3440.0000.343
droSec1.genscan.LENGTH0.0240.0200.042
droSec1.xenoRefGene.LENGTH0.2880.0000.290
droSim1.geneid.LENGTH0.0440.0200.063
droSim1.genscan.LENGTH0.0240.0120.036
droSim1.xenoRefGene.LENGTH0.3120.0000.311
droVir1.geneid.LENGTH0.0960.0080.105
droVir1.genscan.LENGTH0.0480.0120.060
droVir1.xenoRefGene.LENGTH0.2680.0000.270
droVir2.genscan.LENGTH0.0400.0080.051
droVir2.xenoRefGene.LENGTH0.3200.0040.327
droYak1.geneid.LENGTH0.0600.0120.071
droYak1.genscan.LENGTH0.0360.0120.047
droYak1.xenoRefGene.LENGTH0.2440.0000.243
droYak2.genscan.LENGTH0.0360.0040.042
droYak2.xenoRefGene.LENGTH0.3200.0000.324
equCab1.geneSymbol.LENGTH0.0040.0000.006
equCab1.geneid.LENGTH0.1280.0120.140
equCab1.nscanGene.LENGTH0.0480.0080.058
equCab1.refGene.LENGTH0.0000.0040.006
equCab1.sgpGene.LENGTH0.0720.0080.077
equCab2.ensGene.LENGTH0.1080.0160.126
equCab2.geneSymbol.LENGTH0.0120.0000.009
equCab2.nscanGene.LENGTH0.0680.0120.078
equCab2.refGene.LENGTH0.0080.0000.010
equCab2.xenoRefGene.LENGTH0.5880.0000.589
felCat3.ensGene.LENGTH0.1160.0000.116
felCat3.geneSymbol.LENGTH0.0040.0000.004
felCat3.geneid.LENGTH0.8040.0000.806
felCat3.genscan.LENGTH0.6960.0080.704
felCat3.nscanGene.LENGTH0.0880.0080.097
felCat3.refGene.LENGTH0.0080.0000.005
felCat3.sgpGene.LENGTH0.1320.0000.132
felCat3.xenoRefGene.LENGTH1.1360.0041.142
fr1.ensGene.LENGTH0.0760.0120.090
fr1.genscan.LENGTH0.0560.0040.060
fr2.ensGene.LENGTH0.2480.0160.267
galGal2.ensGene.LENGTH0.0520.0040.058
galGal2.geneSymbol.LENGTH0.0200.0040.023
galGal2.geneid.LENGTH0.0440.0120.055
galGal2.genscan.LENGTH0.0600.0160.075
galGal2.refGene.LENGTH0.0240.0000.022
galGal2.sgpGene.LENGTH0.0440.0240.069
galGal3.ensGene.LENGTH0.0760.0080.082
galGal3.geneSymbol.LENGTH0.0240.0000.023
galGal3.genscan.LENGTH0.0720.0040.075
galGal3.nscanGene.LENGTH0.0720.0000.071
galGal3.refGene.LENGTH0.0200.0000.021
galGal3.xenoRefGene.LENGTH0.5280.0000.529
gasAcu1.ensGene.LENGTH0.1840.0120.194
gasAcu1.nscanGene.LENGTH0.1040.0160.121
hg16.acembly.LENGTH0.6280.0000.630
hg16.ensGene.LENGTH0.0880.0000.088
hg16.exoniphy.LENGTH0.2400.0040.246
hg16.geneSymbol.LENGTH0.1360.0080.144
hg16.geneid.LENGTH0.6200.0000.621
hg16.genscan.LENGTH0.0600.0040.064
hg16.knownGene.LENGTH0.1320.0000.131
hg16.refGene.LENGTH0.1160.0040.118
hg16.sgpGene.LENGTH0.0600.0000.062
hg17.acembly.LENGTH0.4560.0000.457
hg17.acescan.LENGTH0.0120.0040.013
hg17.ccdsGene.LENGTH0.0280.0040.033
hg17.ensGene.LENGTH0.1360.0120.149
hg17.exoniphy.LENGTH0.3880.0000.391
hg17.geneSymbol.LENGTH0.1120.0040.112
hg17.geneid.LENGTH0.0760.0080.084
hg17.genscan.LENGTH0.1880.0000.187
hg17.knownGene.LENGTH0.1160.0040.119
hg17.refGene.LENGTH0.1000.0040.107
hg17.sgpGene.LENGTH0.0680.0120.084
hg17.vegaGene.LENGTH0.0480.0080.057
hg17.vegaPseudoGene.LENGTH0.0200.0040.024
hg17.xenoRefGene.LENGTH0.2200.0000.223
hg18.acembly.LENGTH0.6520.0000.653
hg18.acescan.LENGTH0.0040.0080.014
hg18.ccdsGene.LENGTH0.0440.0080.049
hg18.ensGene.LENGTH0.2320.0000.233
hg18.exoniphy.LENGTH0.9880.0000.987
hg18.geneSymbol.LENGTH0.0920.0040.096
hg18.geneid.LENGTH0.0720.0120.083
hg18.genscan.LENGTH0.0560.0080.064
hg18.knownGene.LENGTH0.1440.0080.151
hg18.knownGeneOld3.LENGTH0.0720.0080.078
hg18.refGene.LENGTH0.0960.0000.097
hg18.sgpGene.LENGTH0.0680.0120.080
hg18.sibGene.LENGTH0.3880.0000.386
hg18.xenoRefGene.LENGTH0.3480.0120.361
hg19.ccdsGene.LENGTH0.0400.0160.057
hg19.ensGene.LENGTH0.4520.0040.457
hg19.exoniphy.LENGTH0.3840.0000.383
hg19.geneSymbol.LENGTH0.1000.0080.107
hg19.knownGene.LENGTH0.1840.0080.192
hg19.nscanGene.LENGTH0.2280.0000.228
hg19.refGene.LENGTH0.1080.0040.112
hg19.xenoRefGene.LENGTH0.4280.0000.432
loxAfr3.xenoRefGene.LENGTH0.9560.0040.963
mm7.ensGene.LENGTH0.1240.0000.122
mm7.geneSymbol.LENGTH0.0840.0000.085
mm7.geneid.LENGTH0.6040.0120.619
mm7.genscan.LENGTH0.0640.0000.061
mm7.knownGene.LENGTH0.1000.0000.099
mm7.refGene.LENGTH0.0760.0040.079
mm7.sgpGene.LENGTH0.0760.0080.085
mm7.xenoRefGene.LENGTH0.3120.0000.312
mm8.ccdsGene.LENGTH0.0280.0040.031
mm8.ensGene.LENGTH0.0760.0080.082
mm8.geneSymbol.LENGTH0.0840.0000.085
mm8.geneid.LENGTH0.0840.0040.088
mm8.genscan.LENGTH0.0560.0000.058
mm8.knownGene.LENGTH0.0800.0080.090
mm8.nscanGene.LENGTH0.0600.0000.057
mm8.refGene.LENGTH0.080.000.08
mm8.sgpGene.LENGTH0.0760.0080.084
mm8.sibGene.LENGTH0.2360.0000.233
mm8.xenoRefGene.LENGTH0.4160.0040.421
mm9.acembly.LENGTH0.2960.0040.300
mm9.ccdsGene.LENGTH0.0360.0080.042
mm9.ensGene.LENGTH0.1840.0040.186
mm9.exoniphy.LENGTH0.5040.0040.508
mm9.geneSymbol.LENGTH0.0960.0040.099
mm9.geneid.LENGTH0.3240.0080.332
mm9.genscan.LENGTH0.0720.0000.070
mm9.knownGene.LENGTH0.1160.0200.137
mm9.nscanGene.LENGTH0.060.000.06
mm9.refGene.LENGTH0.0800.0000.082
mm9.sgpGene.LENGTH0.0840.0120.094
mm9.xenoRefGene.LENGTH0.4360.0080.446
monDom1.genscan.LENGTH0.1560.0000.159
monDom4.ensGene.LENGTH0.0760.0080.087
monDom4.geneSymbol.LENGTH0.0080.0000.005
monDom4.genscan.LENGTH0.0640.0120.076
monDom4.nscanGene.LENGTH0.0640.0160.080
monDom4.refGene.LENGTH0.0040.0000.004
monDom4.xenoRefGene.LENGTH0.5200.0040.525
monDom5.ensGene.LENGTH0.1200.0000.119
monDom5.geneSymbol.LENGTH0.0000.0040.005
monDom5.genscan.LENGTH0.5760.0000.575
monDom5.nscanGene.LENGTH0.0960.0000.094
monDom5.refGene.LENGTH0.0040.0000.005
monDom5.xenoRefGene.LENGTH0.6320.0000.630
ornAna1.ensGene.LENGTH0.0880.0160.107
ornAna1.geneSymbol.LENGTH0.0000.0000.003
ornAna1.refGene.LENGTH0.0000.0000.002
ornAna1.xenoRefGene.LENGTH0.5560.0040.562
oryLat2.ensGene.LENGTH0.0720.0080.080
oryLat2.geneSymbol.LENGTH0.0080.0000.005
oryLat2.refGene.LENGTH0.0040.0000.004
oryLat2.xenoRefGene.LENGTH0.5440.0000.544
panTro1.ensGene.LENGTH0.0880.0160.104
panTro1.geneid.LENGTH0.1440.0040.148
panTro1.genscan.LENGTH0.0560.0040.058
panTro1.xenoRefGene.LENGTH0.1200.0040.121
panTro2.ensGene.LENGTH0.1080.0000.111
panTro2.geneSymbol.LENGTH0.0960.0080.104
panTro2.genscan.LENGTH0.060.000.06
panTro2.nscanGene.LENGTH0.060.000.06
panTro2.refGene.LENGTH0.0960.0080.104
panTro2.xenoRefGene.LENGTH0.5160.0040.517
petMar1.xenoRefGene.LENGTH0.2800.0120.292
ponAbe2.ensGene.LENGTH0.1600.0120.170
ponAbe2.geneSymbol.LENGTH0.0160.0000.018
ponAbe2.genscan.LENGTH0.0600.0040.064
ponAbe2.nscanGene.LENGTH0.060.000.06
ponAbe2.refGene.LENGTH0.0160.0000.016
ponAbe2.xenoRefGene.LENGTH0.8040.0000.806
priPac1.xenoRefGene.LENGTH0.440.000.44
rheMac2.ensGene.LENGTH0.2240.0000.224
rheMac2.geneSymbol.LENGTH0.0080.0000.007
rheMac2.geneid.LENGTH0.080.000.08
rheMac2.nscanGene.LENGTH0.0640.0000.064
rheMac2.refGene.LENGTH0.0040.0000.006
rheMac2.sgpGene.LENGTH0.0720.0080.078
rheMac2.xenoRefGene.LENGTH0.8160.0000.817
rn3.ensGene.LENGTH0.1360.0080.147
rn3.geneSymbol.LENGTH0.0640.0160.082
rn3.geneid.LENGTH0.0560.0000.054
rn3.genscan.LENGTH0.0640.0040.069
rn3.knownGene.LENGTH0.0280.0080.036
rn3.nscanGene.LENGTH0.060.000.06
rn3.refGene.LENGTH0.0760.0040.080
rn3.sgpGene.LENGTH0.0680.0000.068
rn3.xenoRefGene.LENGTH1.1120.0001.110
rn4.ensGene.LENGTH0.1560.0000.158
rn4.geneSymbol.LENGTH0.0520.0240.074
rn4.geneid.LENGTH0.0920.0160.106
rn4.genscan.LENGTH0.0600.0040.065
rn4.knownGene.LENGTH0.0240.0120.036
rn4.nscanGene.LENGTH0.0480.0320.083
rn4.refGene.LENGTH0.0560.0160.073
rn4.sgpGene.LENGTH0.0880.0040.091
rn4.xenoRefGene.LENGTH0.4240.0000.421
sacCer1.ensGene.LENGTH0.0240.0040.028
sacCer2.ensGene.LENGTH0.0240.0040.027
strPur1.geneSymbol.LENGTH0.0080.0000.006
strPur1.genscan.LENGTH0.0640.0000.066
strPur1.refGene.LENGTH0.0040.0040.006
strPur1.xenoRefGene.LENGTH0.680.000.68
strPur2.geneSymbol.LENGTH0.0080.0000.005
strPur2.genscan.LENGTH0.1040.0040.108
strPur2.refGene.LENGTH0.0040.0000.005
strPur2.xenoRefGene.LENGTH0.7680.0000.769
supportedGeneIDs0.1080.0042.549
supportedGenomes0.7800.0001.204
taeGut1.ensGene.LENGTH0.0720.0000.073
taeGut1.geneSymbol.LENGTH0.0040.0000.003
taeGut1.genscan.LENGTH0.0360.0120.047
taeGut1.nscanGene.LENGTH0.0280.0120.040
taeGut1.refGene.LENGTH0.0040.0000.004
taeGut1.xenoRefGene.LENGTH0.5520.0000.551
tetNig1.ensGene.LENGTH0.0960.0120.105
tetNig1.geneid.LENGTH0.0720.0040.076
tetNig1.genscan.LENGTH0.0680.0120.078
tetNig1.nscanGene.LENGTH0.0680.0120.083
tetNig2.ensGene.LENGTH0.0760.0080.087
unfactor0.0040.0000.005
xenTro1.genscan.LENGTH0.0880.0000.088
xenTro2.ensGene.LENGTH0.1040.0160.121
xenTro2.geneSymbol.LENGTH0.0280.0200.049
xenTro2.genscan.LENGTH0.0880.0080.094
xenTro2.refGene.LENGTH0.0360.0120.049