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BioC 3.4: CHECK report for trackViewer on malbec1

This page was generated on 2017-04-15 16:11:52 -0400 (Sat, 15 Apr 2017).

Package 1245/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trackViewer 1.10.2
Jianhong Ou
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/trackViewer
Last Changed Rev: 124707 / Revision: 128728
Last Changed Date: 2016-12-01 12:01:16 -0500 (Thu, 01 Dec 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: trackViewer
Version: 1.10.2
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings trackViewer_1.10.2.tar.gz
StartedAt: 2017-04-15 01:41:29 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 01:46:31 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 302.2 seconds
RetCode: 0
Status:  OK 
CheckDir: trackViewer.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings trackViewer_1.10.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.4-bioc/meat/trackViewer.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘trackViewer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘trackViewer’ version ‘1.10.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘trackViewer’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
trackViewer-package 17.552  0.044  18.944
viewTracks          10.184  0.000  11.249
parseWIG            10.016  0.004  10.411
geneModelFromTxdb    7.936  0.156   8.360
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

trackViewer.Rcheck/00install.out:

* installing *source* package ‘trackViewer’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (trackViewer)

trackViewer.Rcheck/trackViewer-Ex.timings:

nameusersystemelapsed
GRoperator1.1920.0001.195
addArrowMark0.0040.0040.009
addGuideLine0.0040.0000.004
coverageGR0.1720.0240.197
dandelion.plot1.7200.0041.724
geneModelFromTxdb7.9360.1568.360
getCurTrackViewport0.0040.0000.006
importBam0.3880.0000.451
importData2.0080.0002.102
importScore0.6520.0040.656
lolliplot0.6840.0000.685
optimizeStyle0.6600.0000.657
parse2GRanges0.0080.0000.009
parseWIG10.016 0.00410.411
plotGRanges0.7720.0000.775
track0.0400.0000.041
trackViewer-package17.552 0.04418.944
trackViewerStyle000
viewTracks10.184 0.00011.249